CB610634

Overview
NameCB610634
Unique NameCB610634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610634 vs. ExPASy Swiss-Prot
Match: PHYD1_BOVIN (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Bos taurus GN=PHYHD1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.385e-45
Identity = 95/189 (50.26%), Postives = 121/189 (64.02%), Query Frame = 3
Query:  195 GYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV----TDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPH*DNSFLITEP-STCTGLWVALEDATIMNGCLWAIPGSHKNGLVREV 734
            G++VLE F S +E EAM++++D ++   D    C T   FST  ++++    + DYF  S +KI FFFE+  F   GN   P E SINK+GHALH LDP+F+  + S K   L  SLG + PV +QSMYIFKQP  GGEV PH D SFL TEP     GLW+ALEDA + NGCLW IPGSH  G+ R +
Sbjct:   16 GFLVLEGFLSADECEAMQRRIDEIVAKMDVPLHCRTE--FSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDKQGNFLVPPEKSINKIGHALHALDPIFRCVTHSHKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVAPHQDASFLYTEPLGRVLGLWIALEDAMLENGCLWFIPGSHTGGVSRRM 202          
BLAST of CB610634 vs. ExPASy Swiss-Prot
Match: PHYD1_DANRE (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Danio rerio GN=phyhd1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.149e-44
Identity = 92/190 (48.42%), Postives = 121/190 (63.68%), Query Frame = 3
Query:  192 QGYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKVTD----DYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPH*DNSFLITEP-STCTGLWVALEDATIMNGCLWAIPGSHKNGLVREV 734
            +GY+VLE   S EE +A+R++M  +++  D    C T   FST + +++      DYF  S +KI FFFE+  F D G    PKE S+NK+GHALH  +P+FK+ + S K  N+   L    PV +QSMYIFKQPGIGGEV PH D +FL T+P     G+WVALEDA   NGCLW IPGSH +G+ R +
Sbjct:   15 EGYLVLEGLLSPEECDALRRRMSEIIESMDVPEHCRTQ--FSTDHDEQLKTQGNADYFITSGDKIRFFFEKGVFDDKGEFVVPKEQSLNKIGHALHAYEPLFKRVTHSPKVQNICKKLELINPVILQSMYIFKQPGIGGEVTPHQDATFLYTQPLGRVMGVWVALEDAMQENGCLWFIPGSHNDGITRRM 202          
BLAST of CB610634 vs. ExPASy Swiss-Prot
Match: PHYD1_HUMAN (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Homo sapiens GN=PHYHD1 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.393e-43
Identity = 94/189 (49.74%), Postives = 121/189 (64.02%), Query Frame = 3
Query:  195 GYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV----TDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPH*DNSFLITEP-STCTGLWVALEDATIMNGCLWAIPGSHKNGLVREV 734
            G++VLE F S EE  AM++++  ++   D    C T   FST  ++++    + DYF  S +KI FFFE+  F + GN   P E SINK+GHALH  DPVFK  + S K   L  SLG + PV +QSMYIFKQP  GGEV PH D SFL TEP     G+W+A+EDAT+ NGCLW IPGSH +G+ R +
Sbjct:   16 GFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTE--FSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRRM 202          
BLAST of CB610634 vs. ExPASy Swiss-Prot
Match: PHYD1_MOUSE (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Mus musculus GN=Phyhd1 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.793e-41
Identity = 89/189 (47.09%), Postives = 118/189 (62.43%), Query Frame = 3
Query:  195 GYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKVTD----DYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPH*DNSFLITEP-STCTGLWVALEDATIMNGCLWAIPGSHKNGLVREV 734
            G+++LE F + +E  AM++++  ++   D    C T   FST   +++      DYF  S +KI FFFE+  F + GN   P E SINK+GHALH  DPVF+  + S K   L+ SLG + PV +QSMYIFKQP  GGEV PH D +FL TEP     GLW+A+EDA + NGCLW IPGSH  G+ R +
Sbjct:   16 GFLLLEGFFTADECVAMQQRIGEIVAEMDVPLHCRTE--FSTQEDEQLQTQGKTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFRSITHSPKVQALVRSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDATFLYTEPLGRVLGLWIAMEDAMLENGCLWFIPGSHTRGVSRRM 202          
BLAST of CB610634 vs. ExPASy Swiss-Prot
Match: PHYD1_CAEEL (Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog OS=Caenorhabditis elegans GN=Y105C5B.9 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.450e-41
Identity = 82/178 (46.07%), Postives = 120/178 (67.42%), Query Frame = 3
Query:  195 GYVVLESFASDEEIEAMRKQMDHLLDGFDCST--SSVFSTTNQQK-VTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPH*DNSFLITEP-STCTGLWVALEDATIMNGCLWAIPGSHKN 716
            G+VV+E+  +D+EI+ M+K +  +++  D +    SVFST ++ K   D YF  S++KI FFFEE A   DG L  PK+ ++NK+GH LH LDP F+K + + K  N+   +GY+ P  +QSMYIFKQP IGG V  H D++FL  +P    TG+W+A+++A++ NGCL  IPGSHK+
Sbjct:   12 GFVVVENVFNDQEIDEMKKSISKIVNDMDLAEHPKSVFSTYDEDKHAADSYFLNSSDKIRFFFEEGAVDKDGELTVPKDKALNKIGHGLHFLDPTFEKMTFNSKIQNIFKEIGYQEPGVVQSMYIFKQPKIGGAVTDHVDSTFLRVDPIDHLTGVWIAIDEASVENGCLSFIPGSHKD 189          
BLAST of CB610634 vs. ExPASy Swiss-Prot
Match: PHYD1_RAT (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Rattus norvegicus GN=Phyhd1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.459e-40
Identity = 88/189 (46.56%), Postives = 117/189 (61.90%), Query Frame = 3
Query:  195 GYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV----TDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPH*DNSFLITEP-STCTGLWVALEDATIMNGCLWAIPGSHKNGLVREV 734
            G+++LE F + +E   M++++  ++   D    C T   FST   +++      DYF  S +KI FFFE+  F + GN   P E SINK+GHALH  DPVF+  + S K   L+ SLG + PV +QSMYIFKQP  GGEV PH D +FL TEP     GLW+A EDA + NGCLW IPGSH +G+ R +
Sbjct:   16 GFLLLEGFFTADECVVMQQRIGEIVAEMDVPLHCRTE--FSTQEDEQLQTQGNTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFRSITHSPKVQALVRSLGLQIPVVVQSMYIFKQPHFGGEVSPHQDATFLYTEPLGRVLGLWIATEDAMLENGCLWFIPGSHTSGVSRRM 202          
BLAST of CB610634 vs. ExPASy Swiss-Prot
Match: PHYD1_DICDI (Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=phyhd1 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.477e-40
Identity = 83/179 (46.37%), Postives = 120/179 (67.04%), Query Frame = 3
Query:  195 GYVVLESFASDEEIEAMRKQMDHLLDGFDC-STSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPH*DNSFLITEPSTCTGLWVALEDATIMNGCLWAIPGSHKNGLVR 728
            G++++ +F + EEI+ +R +M  L+D  D  ST S+F+T+ Q++  DDYF  S +KI +FFE+ +  +DG L  PK+++ NKVGHALH+L+P F++FS S+K  +L++SLG         MYIFK   IGGEV  H D++FL T P T   +W A ED+TI NGCL  +PGSH  G+ R
Sbjct:   15 GFLIIRNFNTTEEIDIVRGEMKKLIDELDTPSTISIFTTSEQERKVDDYFLGSGDKIRYFFEKGSI-EDGKLIVPKDMAFNKVGHALHDLNPKFEEFSYSQKIHDLIYSLGIYNKALSGIMYIFKNQKIGGEVDIHQDSTFLHTTPLTTHAIWFAFEDSTIENGCLRGLPGSHTEGITR 192          
BLAST of CB610634 vs. ExPASy Swiss-Prot
Match: PHYD1_CAEBR (Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog OS=Caenorhabditis briggsae GN=CBG00325 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.637e-39
Identity = 80/178 (44.94%), Postives = 117/178 (65.73%), Query Frame = 3
Query:  195 GYVVLESFASDEEIEAMRKQMDHLLDGFDCST--SSVFSTTNQQK-VTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPH*DNSFLITEP-STCTGLWVALEDATIMNGCLWAIPGSHKN 716
            G+VV+E+  +D+EIE ++  +  +++  + +    SVFST ++ K   D YF  S++KI FFFEE A   DG L  PK+ ++NK+GH LH LDP FKK + + K   +   +GY+ P  +QSMYIFKQP IGG V  H D++FL   P    TG+W+A+++A++ NGCL  IPGSHK+
Sbjct:   12 GFVVIENVFNDQEIEEIKGAIGKIVEDMNLAEHPKSVFSTYDEDKHAADSYFLNSSDKIRFFFEEGAVDKDGELTVPKDKALNKIGHGLHLLDPTFKKMTFNSKIQKIFQGIGYQEPEVVQSMYIFKQPKIGGAVTDHVDSTFLRVNPIDHLTGVWIAIDEASVENGCLSFIPGSHKD 189          
The following BLAST results are available for this feature:
BLAST of CB610634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PHYD1_BOVIN7.385e-4550.26Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_DANRE2.149e-4448.42Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_HUMAN1.393e-4349.74Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_MOUSE3.793e-4147.09Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_CAEEL8.450e-4146.07Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_RAT2.459e-4046.56Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_DICDI5.477e-4046.37Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_CAEBR4.637e-3944.94Phytanoyl-CoA dioxygenase domain-containing protei... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_C08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610634 ID=CB610634; Name=CB610634; organism=Citrus sinensis; type=EST; length=736bp
GGGGATTAAGGGCAGGCCTTTTGAAAATTAACCNNCAGAAAAAAATAAAG
AAACAGGGGTTGAAGATAATAAAAATACAACGATAAGACCTGTATTTGAG
CAGCAGATTCAAACGAAACAAGCAAGCAGAACGCAAGGACATGGGGCTCG
CCGGAAATCTCAACTCAGACAATCTCAACTTCTTCAACTCTCAAGGATAT
GTGGTGTTAGAATCATTTGCGAGTGATGAAGAGATTGAAGCCATGAGGAA
GCAAATGGATCATTTACTTGACGGCTTTGACTGCTCCACCTCCTCTGTTT
TCTCCACAACGAATCAGCAAAAAGTGACTGATGATTACTTCTATGAGAGT
GCTGAAAAGATTTCGTTTTTCTTTGAAGAAAAAGCATTTGGGGATGATGG
AAACTTAAAGCAACCAAAAGAACTCTCTATCAATAAAGTTGGCCATGCAT
TACACGAACTTGATCCAGTTTTCAAAAAGTTCTCTCGCTCTGAGAAAACA
TCAAATTTGCTGCACTCTTTGGGTTACAAAAGGCCTGTGGACATTCAATC
AATGTACATATTTAAGCAACCAGGCATTGGAGGTGAAGTTGTGCCACACT
AGGATAACTCATTCCTAATAACTGAACCATCAACTTGCACAGGGCTGTGG
GTGGCTCTAGAAGATGCAACAATAATGAACGGTTGCCTTTGGGCCATTCC
CGGATCACATAAAAATGGGCTTGTTAGGGAGGTTAT
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