CB610750

Overview
NameCB610750
Unique NameCB610750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig404 contig Csv1_Contig404:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610750 vs. ExPASy Swiss-Prot
Match: TIPRL_DICDI (TIP41-like protein OS=Dictyostelium discoideum GN=tiprl PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.857e-22
Identity = 63/169 (37.28%), Postives = 98/169 (57.99%), Query Frame = 1
Query:  205 RRGLRIRGWEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQEGLPPVEVPAAAQWKFRSKPFE-QLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNG 708
            + G+ I  W I + K  IL S+  E WE++L  N LPEMV+G + + L + +    I FN  DAL    +     ++V ++ +W+  +K FE Q+   +++TF++PY G+    + T  H    N +    L +E+  EKID+  L   +PILF+D+V+LYEDELADNG
Sbjct:   13 KNGIEIGDWVIHTSKNPILKSTEKEEWEKELVLNGLPEMVYGNNFIRLSNEKRDITIVFNCMDALKMLDKVADQSIKVSSSKKWEEINKGFEGQIEKSFEWTFSSPYTGT----ILTRGH-CYSNFEKPIGL-FENTTEKIDIEKLKRPDPILFFDDVLLYEDELADNG 175          
BLAST of CB610750 vs. ExPASy Swiss-Prot
Match: TIPRL_XENLA (TIP41-like protein OS=Xenopus laevis GN=tiprl PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 56/164 (34.15%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  229 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQEGLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGV 711
            W++ + K  I+ S+ VE+  +++    LPEM+FGE+ L ++H  SG  I FNA DAL   K      V+V  A +W   +  S+  ++++  YD+T+TT Y G+               L  +  L+     E+I+   L +KE I+F++EV+L+EDEL D+GV
Sbjct:   18 WQLTAIKTHIMKSADVEKLAEEMSMPCLPEMMFGENVLRIQHT-SGFGIEFNANDALKVVKNSQ-GSVKVACAEEWQESRSDSEHSKEVVKPYDWTYTTDYKGTL--------------LGDNMKLNVVPTTERINTEKLKAKEQIMFFEEVLLFEDELHDHGV 165          
BLAST of CB610750 vs. ExPASy Swiss-Prot
Match: TIP41_YEAST (Type 2A phosphatase activator TIP41 OS=Saccharomyces cerevisiae GN=TIP41 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 59/185 (31.89%), Postives = 91/185 (49.19%), Query Frame = 1
Query:  214 LRIRGWEIESRKRSILNSSSVERWE-QKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQEGLPPVEVPAAAQWKFRSKPFEQ------------------LILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGV 711
            + I  W I SRK+ ILNS  ++ WE +KL+   LPEM+FG + + +++ +    I FNA DAL   + +    + V  +  W   SK  +                   +I  YD+T+TT Y G+E+                  S    D  +K+ +  LA  + ILFYD+++L+EDELADNG+
Sbjct:   92 ISINDWTISSRKKPILNSQELDIWENEKLKGLTLPEMIFGNNYIRIENSKQHWSIEFNALDALKEVQLQD-SGIRVAYSNDW-INSKKRQNSTNGAQRFTNDVNDDSLNIIHKYDWTYTTRYKGTES---------------SPESKFRLDNDQKLPLDKLAVHDKILFYDDMILFEDELADNGI 259          
BLAST of CB610750 vs. ExPASy Swiss-Prot
Match: TIPRL_XENTR (TIP41-like protein OS=Xenopus tropicalis GN=tiprl PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 52/164 (31.71%), Postives = 90/164 (54.88%), Query Frame = 1
Query:  229 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQEGLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGV 711
            W++ + K  I+ S+  E+  +++    LPEM+FG++ L ++H  SG  I FNA DAL   K      ++V  A +W   +  S+  ++++  YD+T+TT Y G+               L  +  L+     +KI+   L ++E I+F++EV+L+EDEL D+GV
Sbjct:   18 WQLTAIKTHIMKSADAEKLAEEMSMPCLPEMMFGDNVLRIQHT-SGFGIEFNAKDALKVVKSNQAS-LKVACAEEWQESRSDSEHNKEVVKPYDWTYTTDYKGTL--------------LGDNMKLNVIPTTDKINTEKLKAREQIMFFEEVLLFEDELHDHGV 165          
BLAST of CB610750 vs. ExPASy Swiss-Prot
Match: TIPRL_RAT (TIP41-like protein OS=Rattus norvegicus GN=Tiprl PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = 1
Query:  229 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQ-EGLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGV 711
            W++ + K  I+ S+ VE+   +L    LPEM+FG++ L ++H  SG  I FNA DAL      +G+  ++V  A +W   +   +  +++I  YD+T+TT Y G+               L  S  L      + ID   L ++E I F++EV+L+EDEL D+GV
Sbjct:   18 WKLTASKTHIMKSADVEKLADELHMPSLPEMMFGDNVLRIQH-GSGFGIEFNATDALRCVNNYQGM--LKVACAEEWQESRTEGEHSKEVIKPYDWTYTTDYKGT--------------LLGESLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELHDHGV 165          
BLAST of CB610750 vs. ExPASy Swiss-Prot
Match: TIPRL_MOUSE (TIP41-like protein OS=Mus musculus GN=Tiprl PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = 1
Query:  229 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQ-EGLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGV 711
            W++ + K  I+ S+ VE+   +L    LPEM+FG++ L ++H  SG  I FNA DAL      +G+  ++V  A +W   +   +  +++I  YD+T+TT Y G+               L  S  L      + ID   L ++E I F++EV+L+EDEL D+GV
Sbjct:   18 WKLTASKTHIMKSADVEKLADELHMPSLPEMMFGDNVLRIQH-GSGFGIEFNATDALRCVNNYQGM--LKVACAEEWQESRTEGEHSKEVIKPYDWTYTTDYKGT--------------LLGESLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELHDHGV 165          
BLAST of CB610750 vs. ExPASy Swiss-Prot
Match: TIPRL_HUMAN (TIP41-like protein OS=Homo sapiens GN=TIPRL PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = 1
Query:  229 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQ-EGLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGV 711
            W++ + K  I+ S+ VE+   +L    LPEM+FG++ L ++H  SG  I FNA DAL      +G+  ++V  A +W   +   +  +++I  YD+T+TT Y G+               L  S  L      + ID   L ++E I F++EV+L+EDEL D+GV
Sbjct:   18 WKLTASKTHIMKSADVEKLADELHMPSLPEMMFGDNVLRIQH-GSGFGIEFNATDALRCVNNYQGM--LKVACAEEWQESRTEGEHSKEVIKPYDWTYTTDYKGT--------------LLGESLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELHDHGV 165          
The following BLAST results are available for this feature:
BLAST of CB610750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TIPRL_DICDI2.857e-2237.28TIP41-like protein OS=Dictyostelium discoideum GN=... [more]
TIPRL_XENLA3.995e-1634.15TIP41-like protein OS=Xenopus laevis GN=tiprl PE=2... [more]
TIP41_YEAST1.983e-1531.89Type 2A phosphatase activator TIP41 OS=Saccharomyc... [more]
TIPRL_XENTR1.679e-1431.71TIP41-like protein OS=Xenopus tropicalis GN=tiprl ... [more]
TIPRL_RAT4.884e-1433.33TIP41-like protein OS=Rattus norvegicus GN=Tiprl P... [more]
TIPRL_MOUSE4.884e-1433.33TIP41-like protein OS=Mus musculus GN=Tiprl PE=2 S... [more]
TIPRL_HUMAN4.884e-1433.33TIP41-like protein OS=Homo sapiens GN=TIPRL PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IaF_C06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IaF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610750 ID=CB610750; Name=CB610750; organism=Citrus sinensis; type=EST; length=711bp
TTTTTTTTTTGAGAAGCAAATCTCTGCAACCTAAAAACCCAAAGACGCAA
CCAAACAGAAAATAGCGGGGCAAACTAAGAAGTCGTACTTAAATAGGAAG
GTAAAACCGGAAGCCGATCGAGTTGGTGAGACAAGCCGGGGATGGAAGTC
GAGGTGGACGAGAAAGACCTAAAGGTAGCCGGTGCCGAACCGTTGACTGG
CGAACGCCGCGGACTGCGGATTCGCGGCTGGGAGATCGAGTCTCGTAAGC
GCTCCATTCTCAATTCCTCCTCTGTCGAGCGGTGGGAGCAAAAGCTAGAA
ACAAATCATTTGCCAGAGATGGTTTTTGGAGAGAGTTGTTTGGTTCTTAA
GCATGTTGAAAGTGGAACTAAGATTCATTTCAATGCGTTTGATGCTTTAA
GTGGTTGGAAACAGGAAGGTTTACCGCCTGTTGAGGTTCCTGCGGCCGCA
CAATGGAAATTCAGAAGCAAGCCATTTGAGCAGTTGATACTAGATTACGA
CTACACATTTACAACACCTTACTGTGGAAGTGAAACAATTGAGATGGATA
CGGATAAGCATGGGACTAGAGACAACTTGGATGGGAGTTCCAGCCTGCAC
TGGGAGGACTGTAAGGAGAAAATTGATGTGGTAGCGCTAGCATCAAAAGA
GCCTATTCTTTTCTATGATGAGGTAGTTTTATATGAAGATGAGTTGGCTG
ATAATGGAGTG
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