CB610763

Overview
NameCB610763
Unique NameCB610763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length364
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610763 vs. ExPASy Swiss-Prot
Match: CMTA5_ARATH (Calmodulin-binding transcription activator 5 OS=Arabidopsis thaliana GN=CMTA5 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.165e-34
Identity = 62/77 (80.52%), Postives = 72/77 (93.51%), Query Frame = 3
Query:  105 LVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNW 335
            L+GSEIHGFHTL+DLD+  M++EA +RWLRPNEIHA+LCN K+F+IN KPVNLPKSGT+VLFDRKMLRNFRKDGHNW
Sbjct:    9 LIGSEIHGFHTLQDLDIQTMLDEAYSRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNW 85          
BLAST of CB610763 vs. ExPASy Swiss-Prot
Match: CMTA6_ARATH (Calmodulin-binding transcription activator 6 OS=Arabidopsis thaliana GN=CMTA6 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.720e-23
Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  105 LVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNW 335
            L+GSEIHGFHTL+DLDV  M+EEAK+RWLRPNEIHAILC                 G ++LFDRKMLRNFRKDGHNW
Sbjct:    9 LIGSEIHGFHTLQDLDVQTMLEEAKSRWLRPNEIHAILC-----------------GRIILFDRKMLRNFRKDGHNW 68          
BLAST of CB610763 vs. ExPASy Swiss-Prot
Match: CMTA3_ARATH (Calmodulin-binding transcription activator 3 OS=Arabidopsis thaliana GN=CMTA3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  114 SEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNW 335
            +E   F  + +LDV  ++ EA+ RWLRP EI  IL N + F I+ +P   P SG+V +FDRK+LR FRKDGHNW
Sbjct:    2 AEARRFSPVHELDVGQILSEARHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGHNW 75          
BLAST of CB610763 vs. ExPASy Swiss-Prot
Match: CMTA2_ARATH (Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 3
Query:  147 LDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNW 335
            LD+  ++ EA+ RWLRP EI  IL N + F I ++P N P SG++ LFDRK+LR FRKDGHNW
Sbjct:   13 LDIKQLLSEAQHRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNW 75          
BLAST of CB610763 vs. ExPASy Swiss-Prot
Match: CMTA1_ARATH (Calmodulin-binding transcription activator 1 OS=Arabidopsis thaliana GN=CMTA1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.784e-12
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 3
Query:  147 LDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNW 335
            LD+  ++ EA+ RWLRP EI  IL N   F I ++    P SG++ LFDRK+LR FRKDGHNW
Sbjct:   16 LDMEQLLSEAQHRWLRPTEICEILQNYHKFHIASESPTRPASGSLFLFDRKVLRYFRKDGHNW 78          
The following BLAST results are available for this feature:
BLAST of CB610763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CMTA5_ARATH2.165e-3480.52Calmodulin-binding transcription activator 5 OS=Ar... [more]
CMTA6_ARATH1.720e-2366.23Calmodulin-binding transcription activator 6 OS=Ar... [more]
CMTA3_ARATH1.320e-1551.35Calmodulin-binding transcription activator 3 OS=Ar... [more]
CMTA2_ARATH1.906e-1457.14Calmodulin-binding transcription activator 2 OS=Ar... [more]
CMTA1_ARATH1.784e-1253.97Calmodulin-binding transcription activator 1 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IaF_B03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IaF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610763 ID=CB610763; Name=CB610763; organism=Citrus sinensis; type=EST; length=364bp
GGGGATTCGAGAGGGCACATATAAATAAGATCNNAAAACAAATCAGAAAG
CACTCTCTCTGTGATCACCGAAAACAAGCAGGTTTTTATGCGATGGCTGA
GCTGCTTGTCGGCTCAGAGATTCATGGATTCCATACGTTGAAAGATTTGG
ATGTTGCTAATATGATGGAGGAGGCCAAGACAAGATGGCTTCGTCCGAAT
GAAATTCATGCCATCCTATGTAATAGCAAGTATTTCAGCATCAATGCAAA
GCCAGTGAACTTGCCCAAAAGTGGCACTGTTGTATTGTTTGACCGCAAGA
TGCTTAGGAATTTTCGCAAAGATGGTCATAACTGGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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