CB610764

Overview
NameCB610764
Unique NameCB610764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB610764 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.185e-12
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    4 VFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 108
            VFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:   21 VFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55
[Close]
BLAST of CB610764 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.185e-12
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    4 VFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 108
            VFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:   21 VFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55
[Close]
BLAST of CB610764 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.573e-11
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    4 VFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 108
            VFLKFGCK EFWICL+LT+ GY+PGI+YA+Y ITK
Sbjct:   20 VFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54
[Close]
BLAST of CB610764 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    4 VFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 108
            VFL+FGC  EFWICL+LT+LGYIPGIIYA+Y +TK
Sbjct:   20 VFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54
The following BLAST results are available for this feature:
BLAST of CB610764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LTI6B_ORYSJ5.185e-1288.57Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI5.185e-1288.57Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
RCI2B_ARATH2.573e-1177.14Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
RCI2A_ARATH4.390e-1177.14Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IaF_B04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IaF_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610764 ID=CB610764; Name=CB610764; organism=Citrus sinensis; type=EST; length=389bp
GTGGTCTTTCTCAAATTTGGTTGCAAGGCTGAGTTTTGGATCTGTTTGCT
CTTGACAATTCTGGGGTATATCCCTGGAATTATTTATGCTGTTTATGCCA
TCACCAAGAAGTGATCTCTCGTCTTCATCTATTGAGAGATCCCAAGGGCA
TCATGTGTTATGAGATCTTTTATTTACAACCGTTAGATGGGCAGCTCTGA
TTTGATGTAGCCAGATGGGTTCTGATTCTTAATCAACTGGGGTGTGCGTG
TGTGTGTGGGAGAGAGCACTTGTTTCGTTTGTTAATCTTTATCGTTTTCT
TTTCTTTCATTTGTCCTTTTTAATGAATTTTAATTCAATATGTTAATGTA
AAGTGGAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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