CB610840

Overview
NameCB610840
Unique NameCB610840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length435
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2522 contig Csv1_Contig2522:1277..1711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB610840 vs. ExPASy Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.762e-29
Identity = 64/110 (58.18%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:    4 GNSQPEWFGFS-SQQPSPSTVLSKCQMLDRFEQHTLKCSSCREAYSAFQTGQKFLIGATVAFCATAGIPSDLQSRIVXXXXXXXXXXXXXXXHELQKNFVFVDYVHAEID 330
            G SQPEWFG + S QP PSTVL+K QMLDRF+QHT  CSSC+ AY++FQ  +KFL+GATV + ATAG+PSD+Q R+V               HE +KNFVF DYVH+EI+
Sbjct:  428 GKSQPEWFGSTPSNQPLPSTVLTKRQMLDRFDQHTQVCSSCKGAYNSFQILKKFLVGATVFWAATAGVPSDVQIRLVLAGLSLISAASAYALHEQEKNFVFRDYVHSEIE 537
The following BLAST results are available for this feature:
BLAST of CB610840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAO_ARATH1.762e-2958.18Pheophorbide a oxygenase, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_A04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610840 ID=CB610840; Name=CB610840; organism=Citrus sinensis; type=EST; length=435bp
GGGGGCAACAGCCAACCTGAATGGTTCGGCTTCAGCAGCCAACAACCTTC
CCCTTCAACAGTCTTGTCGAAATGTCAGATGCTCGATAGATTTGAGCAGC
ACACCCTCAAGTGTTCATCATGTAGAGAAGCTTATTCAGCATTCCAGACG
GGCCAAAAGTTTCTCATTGGCGCGACCGTTGCATTCTGCGCAACAGCTGG
GATTCCTTCAGATTTGCAATCACGGATTGTTTTGGCTGGGCTTGCACTAG
TGAGCGCTGCCTTGGCTTATGCTTTGCATGAACTACAAAAGAATTTTGTG
TTTGTTGATTATGTGCATGCTGAAATCGATTAGAGAGGGAGTAGATATGC
TGCTGAAAGAATCAATGTGTCCAGAGGTATAAGAAAGATATGGTGATAAA
TCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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