CB610887

Overview
NameCB610887
Unique NameCB610887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length244
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2009 contig Csv1_Contig2009:422..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610887 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.455e-16
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    5 RKFVLPENANVEAISAVCQDGVLTVTVDKLPPVEPKKPKTIEVKIA 142
            RKF LPENAN +AISAVCQDGVLTVTV KLPP EPKKPKTIEVK+A
Sbjct:  110 RKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEVKVA 155          
BLAST of CB610887 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.513e-16
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    5 RKFVLPENANVEAISAVCQDGVLTVTVDKLPPVEPKKPKTIEVKIA 142
            RKFVLPENAN+EAISA+ QDGVLTVTV+KLPP EPKKPKTI+VK+A
Sbjct:  107 RKFVLPENANIEAISAISQDGVLTVTVNKLPPPEPKKPKTIQVKVA 152          
BLAST of CB610887 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.513e-16
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    5 RKFVLPENANVEAISAVCQDGVLTVTVDKLPPVEPKKPKTIEVKIA 142
            RKFVLP+NA+V+ ISAVCQDGVLTVTV+KLPP EPKKPKTIEVK+A
Sbjct:  121 RKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEVKVA 166          
BLAST of CB610887 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.005e-15
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 2
Query:    5 RKFVLPENANVEAISAVCQDGVLTVTVDKLPPVEPKKPKTIEVKIA 142
            RKFVLPENAN +AISAVCQDGVL+VTV KLPP EPKKP+TI+VK+A
Sbjct:  114 RKFVLPENANTDAISAVCQDGVLSVTVQKLPPPEPKKPRTIQVKVA 159          
BLAST of CB610887 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.715e-15
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 2
Query:    5 RKFVLPENANVEAISAVCQDGVLTVTVDKLPPVEPKKPKTIEVKIA 142
            RKFVLPENANVEAI+AV QDGVL VTV+KLPP EPKKPKT+EVK+A
Sbjct:  122 RKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEVKVA 167          
BLAST of CB610887 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.925e-15
Identity = 37/46 (80.43%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    5 RKFVLPENANVEAISAVCQDGVLTVTVDKLPPVEPKKPKTIEVKIA 142
            RKFVLP+NA+++ ISAVC+DGVLTVTV+KLPP EPKKPKTIEVK+A
Sbjct:  116 RKFVLPDNADMDKISAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 161          
BLAST of CB610887 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.820e-15
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    5 RKFVLPENANVEAISAVCQDGVLTVTVDKLPPVEPKKPKTIEVKIA 142
            RKFVLP+NA+V+ ++AVC+DGVLTVTV+KLPP EPKKPKTIEVK+A
Sbjct:  119 RKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 164          
BLAST of CB610887 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.989e-15
Identity = 35/46 (76.09%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    5 RKFVLPENANVEAISAVCQDGVLTVTVDKLPPVEPKKPKTIEVKIA 142
            RKFVLP+NA+V+ ++AVC+DGVLTVTV+KLPP EPKKPKTIE+K+A
Sbjct:  109 RKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEIKVA 154          
BLAST of CB610887 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.111e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 2
Query:    5 RKFVLPENANVEAISAVCQDGVLTVTVDKLPPVEPKKPKTIEVKI 139
            RKFVLPENAN E I+AVCQDGVLTVTV+ +PP EPKKP+TIEVKI
Sbjct:  110 RKFVLPENANKEKITAVCQDGVLTVTVENVPPPEPKKPRTIEVKI 154          
BLAST of CB610887 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.234e-14
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    5 RKFVLPENANVEAISAVCQDGVLTVTVDKLPPVEPKKPKTIEVKIA 142
            +KF LPE+AN + ISA+CQDGVLTVTV+KLPP EPKKPKTI+V++A
Sbjct:  115 KKFALPEDANTDKISAICQDGVLTVTVEKLPPPEPKKPKTIQVQVA 160          
The following BLAST results are available for this feature:
BLAST of CB610887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HSP21_SOLPE3.455e-1686.9617.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_PEA4.513e-1684.7817.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP18_ORYSJ4.513e-1684.7818.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_SOYBN1.005e-1582.6117.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP22_IPONI1.715e-1584.7818.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_MAIZE2.925e-1580.4317.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP22_MAIZE3.820e-1578.2617.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP23_MAIZE4.989e-1576.0917.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP21_IPONI1.111e-1482.2217.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_HELAN3.234e-1473.9117.9 kDa class II heat shock protein OS=Helianthus... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIaF_C07 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIaF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610887 ID=CB610887; Name=CB610887; organism=Citrus sinensis; type=EST; length=244bp
GGGGAGGAAATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATTTCGG
CTGTGTGTCAGGACGGAGTGTTGACTGTGACCGTCGATAAGCTGCCACCG
GTGGAGCCCAAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAACTTT
AAAGAGAGAGAATATGCTGGATTGTGGGTGCTGATGTCTTTTCTATTTGC
CGGTTGTTGTTATGAATAATTTTGCGTTGTGGATGCGACAGCAC
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