CB610932
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 5.383e-18 Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1 Query: 79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231 MD+Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR I RNVKGPV EGDI Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.046e-17 Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1 Query: 79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF D +RFI RNVKGPVREGD+ Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDV 50
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.489e-17 Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1 Query: 79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF D +R+I RNVKGPVREGDI Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDI 50
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.517e-12 Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1 Query: 91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231 IK A V KV+GRTGS+GQ TQVRV+F+DD NR I RNVKGPVREGD+ Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.517e-12 Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1 Query: 91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231 IK A V KV+GRTGS+GQ TQVRV+F+DD NR I RNVKGPVREGD+ Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_DROME (40S ribosomal protein S28 OS=Drosophila melanogaster GN=RpS28b PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 3.380e-12 Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 Query: 79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231 MD + A V+KV+GRTGS+GQ TQV+V+FL +QNR I RNVKGPVREGDI Sbjct: 1 MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDI 51
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_OSTOS (40S ribosomal protein S28 OS=Ostertagia ostertagi GN=rps-28 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.414e-12 Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1 Query: 79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQ-NRFIRRNVKGPVREGDI 231 MD +K A V K +GRTGS+GQ TQVRV+F+DD NR I RNVKGPVREGDI Sbjct: 1 MDKPVKPAXVTKNIGRTGSQGQCTQVRVEFMDDNGNRTINRNVKGPVREGDI 52
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_SCHPO (40S ribosomal protein S28 OS=Schizosaccharomyces pombe GN=rps28a PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12 Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1 Query: 79 MDSQ---IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231 MDS +K A V+KV+GRTGSRG VTQVRV+F+DD +R I RNVKGPVRE DI Sbjct: 1 MDSSKVPVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDI 54
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_RAT (40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12 Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 Query: 91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I RNVKGPVREGD+ Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_PIG (40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=3 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12 Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 Query: 91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I RNVKGPVREGD+ Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55 The following BLAST results are available for this feature:
BLAST of CB610932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CB610932 ID=CB610932; Name=CB610932; organism=Citrus sinensis; type=EST; length=480bpback to top |