CB610932

Overview
NameCB610932
Unique NameCB610932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3763 contig Csv1_Contig3763:1..458. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.383e-18
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
Query:   79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231
            MD+Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR I RNVKGPV EGDI
Sbjct:    1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51          
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.046e-17
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
Query:   79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231
            MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RFI RNVKGPVREGD+
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDV 50          
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.489e-17
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
Query:   79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231
            MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+I RNVKGPVREGDI
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDI 50          
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.517e-12
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231
            IK A V KV+GRTGS+GQ TQVRV+F+DD NR I RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55          
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.517e-12
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231
            IK A V KV+GRTGS+GQ TQVRV+F+DD NR I RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55          
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_DROME (40S ribosomal protein S28 OS=Drosophila melanogaster GN=RpS28b PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.380e-12
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1
Query:   79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231
            MD  +  A V+KV+GRTGS+GQ TQV+V+FL +QNR I RNVKGPVREGDI
Sbjct:    1 MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDI 51          
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_OSTOS (40S ribosomal protein S28 OS=Ostertagia ostertagi GN=rps-28 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.414e-12
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQ-NRFIRRNVKGPVREGDI 231
            MD  +K A V K +GRTGS+GQ TQVRV+F+DD  NR I RNVKGPVREGDI
Sbjct:    1 MDKPVKPAXVTKNIGRTGSQGQCTQVRVEFMDDNGNRTINRNVKGPVREGDI 52          
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_SCHPO (40S ribosomal protein S28 OS=Schizosaccharomyces pombe GN=rps28a PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   79 MDSQ---IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231
            MDS    +K A V+KV+GRTGSRG VTQVRV+F+DD +R I RNVKGPVRE DI
Sbjct:    1 MDSSKVPVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDI 54          
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_RAT (40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55          
BLAST of CB610932 vs. ExPASy Swiss-Prot
Match: RS28_PIG (40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIRRNVKGPVREGDI 231
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55          
The following BLAST results are available for this feature:
BLAST of CB610932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RS28_MAIZE5.383e-1888.2440S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=... [more]
RS282_ARATH2.046e-1788.2440S ribosomal protein S28-2 OS=Arabidopsis thalian... [more]
RS281_ARATH3.489e-1788.2440S ribosomal protein S28-1 OS=Arabidopsis thalian... [more]
RS28_ICTPU1.517e-1274.4740S ribosomal protein S28 OS=Ictalurus punctatus G... [more]
RS28_DANRE1.517e-1274.4740S ribosomal protein S28 OS=Danio rerio GN=rps28 ... [more]
RS28_DROME3.380e-1268.6340S ribosomal protein S28 OS=Drosophila melanogast... [more]
RS28_OSTOS4.414e-1269.2340S ribosomal protein S28 OS=Ostertagia ostertagi ... [more]
RS28_SCHPO7.529e-1268.5240S ribosomal protein S28 OS=Schizosaccharomyces p... [more]
RS28_RAT7.529e-1272.3440S ribosomal protein S28 OS=Rattus norvegicus GN=... [more]
RS28_PIG7.529e-1272.3440S ribosomal protein S28 OS=Sus scrofa GN=RPS28 P... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_D10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610932 ID=CB610932; Name=CB610932; organism=Citrus sinensis; type=EST; length=480bp
GGGGCATTGCAAGAACTGCTGAAAGAAATTAGCAGCCGCTTCTGTCACCT
TCTCTCTCTTCTCGCCTCTTCGCTCAGAATGGATTCTCAGATTAAGCACG
CTGTGGTGGTGAAAGTCATGGGCCGCACTGGTTCAAGAGGACAGGTTACT
CAAGTGAGAGTCAAATTTTTAGATGATCAGAACCGATTCATCAGGAGGAA
TGTGAAGGGACCCGTTAGAGAAGGTGATATCCTCACTTTGCTCGAGTCTG
AGAGAGAAGCTAGGAGGCTCCGTTGAAGAGTCCATCTCTGGTCATACTAT
CTCAAACTTTTTGTTGGAAACTAGGGTTCATTACTGTTGTTTTTAGTAGG
CTAGTGATCGGCAATGTTATGAGTTTCACAACTTATTTTGAAGGTTTTCA
TATTAAGACTGGGTTTTGAGCCATGAATTATATGTTTTGGGATGTTTAAT
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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