CB610949

Overview
NameCB610949
Unique NameCB610949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610949 vs. ExPASy Swiss-Prot
Match: MIFH_TRISP (Macrophage migration inhibitory factor homolog OS=Trichinella spiralis PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.002e-16
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:   90 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 389
            MP   ++TN+K   V  S  LS  ++ V NI+ KP +YV + +     +SFGG+  PAA+G L+SIGG+ P  N+  SA +   L KKL +PK+R +I F
Sbjct:    1 MPIFTLNTNIKATDVP-SDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHF 99          

HSP 2 Score: 23.0978 bits (48), Expect = 3.002e-16
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  458 HGSNFGWNGSTF 493
            +G + GWNG+TF
Sbjct:  103 NGDDVGWNGTTF 114          
BLAST of CB610949 vs. ExPASy Swiss-Prot
Match: MIFH_BRUMA (Macrophage migration inhibitory factor homolog OS=Brugia malayi GN=BMBAC01P19.1 PE=3 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 3
Query:   90 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKA 404
            MP   I TN+  + + +S+ L +A++ VA  +GKPE+YV I + G   M FGG+EDP A   L SIG + P VN   +  +  +L  +L +PK+R +I+F D +A
Sbjct:    1 MPYFTIDTNIPQNSI-SSAFLKKASNVVAKALGKPESYVSIHVNGGQAMVFGGSEDPCAVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIEFVDIEA 104          
BLAST of CB610949 vs. ExPASy Swiss-Prot
Match: MIFH_TRITR (Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 3.377e-14
Identity = 36/104 (34.62%), Postives = 60/104 (57.69%), Query Frame = 3
Query:   90 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTK 401
            MP    STNV  + +     L   +  +A ++GKPE+YV + + G   ++FGGT+ PA +G+L+S+GG+  + N+  SA +   L   L +P +R +I F D +
Sbjct:    1 MPIFTFSTNVPSENISVD-FLKSTSKLIAGMLGKPESYVAVHINGGQKITFGGTDAPAGFGQLLSLGGVGGEKNRSHSAKLFKHLTDGLGIPGNRMYINFVDMR 103          

HSP 2 Score: 21.9422 bits (45), Expect = 3.377e-14
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  461 GSNFGWNGSTF 493
            GS+ G+NGSTF
Sbjct:  104 GSDVGYNGSTF 114          
BLAST of CB610949 vs. ExPASy Swiss-Prot
Match: MIFH_WUCBA (Macrophage migration inhibitory factor homolog OS=Wuchereria bancrofti GN=MIF PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 3
Query:   90 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKA 404
            MP   I TN   D + +S+ L +A + V   +GKPE+YV I + G  PM FGG+EDP     L SIG + P VN   +  +  +L  +L +PK+R +I+  D +A
Sbjct:    1 MPYFTIDTNKPQDSI-SSAFLKKAPNVVPKALGKPESYVSIHVNGGQPMVFGGSEDPCPVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIESVDIEA 104          
BLAST of CB610949 vs. ExPASy Swiss-Prot
Match: MIF_XENLA (Macrophage migration inhibitory factor OS=Xenopus laevis GN=mif PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.031e-13
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 3
Query:   90 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKA 404
            MP   I TNV  D V   ++LS+ T  +A   GKP  Y+ I +     MSFG + DP A   L SIG +    NK  +  +  IL K+L++P +R +I +YD  A
Sbjct:    1 MPVFTIRTNVCRDSVP-DTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNA 104          

HSP 2 Score: 24.2534 bits (51), Expect = 6.031e-13
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  458 HGSNFGWNGSTF 493
            + +N GWNGSTF
Sbjct:  103 NAANVGWNGSTF 114          
BLAST of CB610949 vs. ExPASy Swiss-Prot
Match: MIF_CHICK (Macrophage migration inhibitory factor OS=Gallus gallus GN=MIF PE=3 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 1.395e-11
Identity = 38/105 (36.19%), Postives = 52/105 (49.52%), Query Frame = 3
Query:   90 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKA 404
            MP   I TNV  D V   S+L E T  +A   GKP  Y+ + +     MSFGG+ DP A   L SIG +    NK  +  +  ++ K L V   R +I ++D  A
Sbjct:    1 MPMFTIHTNVCKDAVP-DSLLGELTQQLAKATGKPAQYIAVHIVPDQMMSFGGSTDPCALCSLYSIGKIGGQQNKTYTKLLCDMIAKHLHVSADRVYINYFDINA 104          

HSP 2 Score: 24.2534 bits (51), Expect = 1.395e-11
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  458 HGSNFGWNGSTF 493
            + +N GWNGSTF
Sbjct:  103 NAANVGWNGSTF 114          
BLAST of CB610949 vs. ExPASy Swiss-Prot
Match: MIF_XENTR (Macrophage migration inhibitory factor OS=Xenopus tropicalis GN=mif PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.812e-11
Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 3
Query:   90 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYD 395
            MP   + TNV  D +   ++LS+ T  +A   GKP  Y+ I +     MSFG + DP A   L SIG +    NK  S  +   L K++++P +R +I F+D
Sbjct:    1 MPTFTVCTNVCRDSMP-DTLLSDLTKLLAKATGKPAEYIAIHIMPDQMMSFGDSTDPCAVCSLSSIGKIGGPQNKSYSKLLCDYLTKQMNIPANRVYINFHD 101          

HSP 2 Score: 23.8682 bits (50), Expect = 1.812e-11
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  464 SNFGWNGSTF 493
            +N GWNGSTF
Sbjct:  105 ANVGWNGSTF 114          
The following BLAST results are available for this feature:
BLAST of CB610949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MIFH_TRISP3.002e-1642.00Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_BRUMA1.112e-1440.00Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_TRITR3.377e-1434.62Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_WUCBA2.740e-1339.05Macrophage migration inhibitory factor homolog OS=... [more]
MIF_XENLA6.031e-1338.10Macrophage migration inhibitory factor OS=Xenopus ... [more]
MIF_CHICK1.395e-1136.19Macrophage migration inhibitory factor OS=Gallus g... [more]
MIF_XENTR1.812e-1135.29Macrophage migration inhibitory factor OS=Xenopus ... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_D08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610949 ID=CB610949; Name=CB610949; organism=Citrus sinensis; type=EST; length=661bp
GGGGGACTATCAGTGCAATAAAGAAAGAGATCNNGCGAGTGGTTAGGGAA
GCTACAAGAGTAGGGTTTTCCGTCGGAAGTTTCGAGAAGATGCCTTGCTT
GAACATTTCAACTAACGTCAAACTCGATGGCGTTGACACGTCATCCATCC
TCTCCGAGGCCACCTCCACTGTCGCCAACATCATCGGCAAACCCGAGGCC
TACGTGATGATTGTGTTGAAGGGATCGGTACCTATGTCGTTTGGTGGAAC
TGAGGATCCGGCAGCTTATGGTGAGTTGGTGTCCATTGGTGGCCTTAACC
CTGATGTGAACAAGAAGCTGAGTGCTGCAATTTCTGCAATTCTTGAAAAG
AAGCTGTCGGTACCCAAGTCACGATTCTTCATCAAGTTTTATGACACAAA
GGCCCATCAAAGTCGAGAACATGCACAGTGTTTGCATGCTGTACTCCAGC
ACTAGATCATGGTTCAAACTTTGGATGGAATGGATCCACCTTCTAGATAT
TATTCTCAAAGCATGGCGCCATGAACTCTGACAATTGTCTTATCTATATG
GTGATTACAATCTTTAGAACTATGTTAATAATTGGCTGAATATTGTGTAA
TTTCTCCTATGATGTGTTTTCTTCTCGTTGGTGCTAGCCAACAAGATTGT
GGAATAGGAAC
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