CB611067

Overview
NameCB611067
Unique NameCB611067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2676 contig Csv1_Contig2676:176..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611067 vs. ExPASy Swiss-Prot
Match: CS029_HUMAN (Uncharacterized protein C19orf29 OS=Homo sapiens GN=C19orf29 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.041e-33
Identity = 61/91 (67.03%), Postives = 71/91 (78.02%), Query Frame = 3
Query:    6 HYDHDYPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFK 278
            HYD D PPPKIVQGYKFNIFYPDL+DK   P Y +E    N +  I+RFHAGPPYEDIAFKIVN+EWEYSH+ GF+C F  GI  ++F+FK
Sbjct:  594 HYDFDNPPPKIVQGYKFNIFYPDLIDKRSTPEYFLEACADNKDFAILRFHAGPPYEDIAFKIVNREWEYSHRHGFRCQFANGIFQLWFHFK 684          
BLAST of CB611067 vs. ExPASy Swiss-Prot
Match: CS029_MOUSE (Uncharacterized protein C19orf29 homolog OS=Mus musculus PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 4.374e-32
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 3
Query:    6 HYDHDYPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFK 278
            HYD D PPPKIVQGYKFNIFYPDL+ K   P Y +E    N +  I+RFHAGPPYEDIAFKIV++EWEYSH+ GF+C F  GI  ++F+FK
Sbjct:  676 HYDFDNPPPKIVQGYKFNIFYPDLIRKRATPEYFLEACADNRDFAILRFHAGPPYEDIAFKIVSREWEYSHRHGFRCQFANGIFQLWFHFK 766          
BLAST of CB611067 vs. ExPASy Swiss-Prot
Match: YB3C_SCHPO (Uncharacterized protein C2F12.12c OS=Schizosaccharomyces pombe GN=SPBC2F12.12c PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.154e-24
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 3
Query:    3 AHYDHDYPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNG---------ETCIIRFHAGPPYEDIAFKIVNKEWEYSHKK--GFKCTFERGILHVYFNFK 278
            AH++  +PPPK VQGY+FN+FYPDL+   +APTY IE+              + CIIRF AG PY+DIAF IV+K+W+YS K+  GFK +F+ G+L ++F FK
Sbjct:  409 AHFNEAHPPPKAVQGYRFNVFYPDLIGTGRAPTYRIERTRRKNKSDTTDLQDDVCIIRFIAGEPYQDIAFSIVDKDWDYSAKRDHGFKSSFDNGVLSLHFRFK 511          
The following BLAST results are available for this feature:
BLAST of CB611067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CS029_HUMAN1.041e-3367.03Uncharacterized protein C19orf29 OS=Homo sapiens G... [more]
CS029_MOUSE4.374e-3264.84Uncharacterized protein C19orf29 homolog OS=Mus mu... [more]
YB3C_SCHPO1.154e-2450.49Uncharacterized protein C2F12.12c OS=Schizosacchar... [more]
back to top
Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_F03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611067 ID=CB611067; Name=CB611067; organism=Citrus sinensis; type=EST; length=568bp
GGGCTCACTATGACCATGACTACCCGCCGCCAAAAATTGTGCAAGGATAT
AAGTTCAATATCTTTTACCCTGACCTTGTTGACAAGACGAAGGCTCCGAC
ATACACAATTGAGAAAGATGGAAGCAATGGCGAGACATGCATTATTAGGT
TCCATGCCGGGCCTCCATATGAGGACATTGCATTCAAAATTGTTAACAAG
GAATGGGAGTATTCTCATAAGAAAGGATTCAAGTGCACGTTTGAACGTGG
TATATTGCATGTATACTTCAACTTCAAACGCTACCGCTACCGTCGGTGAT
TTGTGGAAAGGCAGTTCTGCTATCTTTTTCTTCCAAGCTTATACTGTCGT
GCCATCATACTCTGTAAACAGTTTTGTACTGATAATTTTCTACATGATCG
TCTGTTGTTTTTGGTAATTAGTGTCCATTTTCAAAAAGCCTAATTGATTA
CAATCACCTAGTTTTTAGCGGCTTCTTAAAAAGTCTCTCGTATTAGTGTA
ACTTTCTGCAAGTAATAAAGCGGCTGATCCCATATTTCCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
back to top