CB611069

Overview
NameCB611069
Unique NameCB611069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2454 contig Csv1_Contig2454:132..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611069 vs. ExPASy Swiss-Prot
Match: LWD1_ARATH (WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 1.774e-93
Identity = 152/178 (85.39%), Postives = 162/178 (91.01%), Query Frame = 3
Query:   96 ISTGRTSSKKRSEIYTYESPWHIYAMNWSVRRDKNYRLAIASLLGQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSGDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIA 629
            I  G    +KRSEIYTYE+PWHIYAMNWSVRRDK YRLAI SLL QYPNRVEIVQLD+S GEIR+DPNLSFEHPYPPTKTIFIPDKECQ+PDLLATS DFLR+WRI+D+  RVELKS LN NKNSE+CGPLTSFDWNEAEPRRIGTSS DTTCTIWDIEREAVDTQLIAHDKEV+DIA
Sbjct:    8 IQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRLWRIADDHSRVELKSCLNSNKNSEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIA 185          

HSP 2 Score: 39.2762 bits (90), Expect = 1.774e-93
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 1
Query:  679 RVFDLRDKEHSTIIYEISE 735
            RVFDLRDKEHSTIIYE SE
Sbjct:  202 RVFDLRDKEHSTIIYESSE 220          
BLAST of CB611069 vs. ExPASy Swiss-Prot
Match: LWD2_ARATH (WD repeat-containing protein LWD2 OS=Arabidopsis thaliana GN=LWD2 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.543e-89
Identity = 145/179 (81.01%), Postives = 159/179 (88.83%), Query Frame = 3
Query:   93 RISTGRTSSKKRSEIYTYESPWHIYAMNWSVRRDKNYRLAIASLLGQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSGDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIA 629
            +I  G     KRSEIYTYE+PW IYAMNWS+RRDK YRLAI SL+ QYPNRVEIVQLD+S GEIR+DPNL FEHPYPPTKT FIPDKECQ+PDLLATS DFLR+WRISD++ RVELKS L+ +KNSE+ GP+TSFDWNEAEPRRIGTSSIDTTCTIWDIERE VDTQLIAHDKEVYDIA
Sbjct:    7 QIQNGSEEQSKRSEIYTYEAPWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEIVQLDESNGEIRSDPNLCFEHPYPPTKTSFIPDKECQRPDLLATSSDFLRLWRISDDESRVELKSCLSSDKNSEFSGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIA 185          

HSP 2 Score: 37.7354 bits (86), Expect = 2.543e-89
Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 1
Query:  679 RVFDLRDKEHSTIIYEISE 735
            RVFDLRDKEHSTIIYE  E
Sbjct:  202 RVFDLRDKEHSTIIYESGE 220          
BLAST of CB611069 vs. ExPASy Swiss-Prot
Match: DCAF7_MOUSE (DDB1- and CUL4-associated factor 7 OS=Mus musculus GN=Dcaf7 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.079e-56
Identity = 102/180 (56.67%), Postives = 128/180 (71.11%), Query Frame = 3
Query:  123 KRSEIYTYESPWHIYAMNWSVRRDKNYRLAIASLLGQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSGDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-----------VDTQLIAHDKEVYDIA 629
            KR EIY YE+PW +YAMNWSVR DK +RLA+ S + +Y N+V++V LD+ + E       +F+HPYP TK ++IPD +   PDLLATSGD+LRVWR+ + + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSIDTTCTIW +E              V TQLIAHDKEVYDIA
Sbjct:    6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFIC--RNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLEC--LLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIA 181          

HSP 2 Score: 30.0314 bits (66), Expect = 7.079e-56
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  679 RVFDLRDKEHSTIIYE 726
            R+FDLR  EHSTIIYE
Sbjct:  202 RMFDLRHLEHSTIIYE 217          
BLAST of CB611069 vs. ExPASy Swiss-Prot
Match: DCAF7_HUMAN (DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.079e-56
Identity = 102/180 (56.67%), Postives = 128/180 (71.11%), Query Frame = 3
Query:  123 KRSEIYTYESPWHIYAMNWSVRRDKNYRLAIASLLGQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSGDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-----------VDTQLIAHDKEVYDIA 629
            KR EIY YE+PW +YAMNWSVR DK +RLA+ S + +Y N+V++V LD+ + E       +F+HPYP TK ++IPD +   PDLLATSGD+LRVWR+ + + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSIDTTCTIW +E              V TQLIAHDKEVYDIA
Sbjct:    6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFIC--RNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLEC--LLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIA 181          

HSP 2 Score: 30.0314 bits (66), Expect = 7.079e-56
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  679 RVFDLRDKEHSTIIYE 726
            R+FDLR  EHSTIIYE
Sbjct:  202 RMFDLRHLEHSTIIYE 217          
BLAST of CB611069 vs. ExPASy Swiss-Prot
Match: TTG1_ARATH (Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 7.700e-55
Identity = 97/175 (55.43%), Postives = 127/175 (72.57%), Query Frame = 3
Query:  117 SKKRSEI-YTYESPWHIYAMNWS-VRRDKNYRLAIASLLGQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPD--KECQKPDLLATSGDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIA 629
            S  RSE   TY+SP+ +YAM +S +R    +R+A+ S L  Y NR++I+  D  +  ++  PNLSFEHPYPPTK +F P   +     DLLA+SGDFLR+W I+++   VE  S+LN +K SE+C PLTSFDWN+ EP+R+GT SIDTTCTIWDIE+  V+TQLIAHDKEV+DIA
Sbjct:    8 SLSRSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPPTKLMFSPPSLRRPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIA 182          

HSP 2 Score: 36.1946 bits (82), Expect = 7.700e-55
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 1
Query:  679 RVFDLRDKEHSTIIYE 726
            R+FDLRDKEHSTIIYE
Sbjct:  199 RIFDLRDKEHSTIIYE 214          
BLAST of CB611069 vs. ExPASy Swiss-Prot
Match: DCAF7_DICDI (DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum GN=wdr68 PE=3 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.707e-54
Identity = 94/169 (55.62%), Postives = 122/169 (72.19%), Query Frame = 3
Query:  123 KRSEIYTYESPWHIYAMNWSVRRDKNYRLAIASLLGQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSGDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIA 629
            ++  IYTY SPW IY ++WS R ++ +RLAI S L  Y NRV+++QL++ T +        FEHPYPPTK ++IPDK   +PDLLAT+GD+LR+W +    R ++LKSLL  N  SE+C PL+SFDWNE +P  + TSSIDTTCTIW+IE     TQLIAHDKEV+DIA
Sbjct:    2 EKKRIYTYNSPWVIYGLSWSSRVNRPFRLAIGSFLEDYTNRVDVIQLNEETDQFEVV--CGFEHPYPPTKCMWIPDKNSNRPDLLATTGDYLRLWEVGSNQRSIKLKSLLT-NVISEFCAPLSSFDWNETDPSLLATSSIDTTCTIWNIETGQAKTQLIAHDKEVFDIA 167          

HSP 2 Score: 30.8018 bits (68), Expect = 1.707e-54
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 1
Query:  679 RVFDLRDKEHSTIIYE 726
            R+FDLR+ EHSTIIYE
Sbjct:  185 RMFDLRNLEHSTIIYE 200          
BLAST of CB611069 vs. ExPASy Swiss-Prot
Match: YBE8_SCHPO (Uncharacterized WD repeat-containing protein C17D11.08 OS=Schizosaccharomyces pombe GN=SPBC17D11.08 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.853e-22
Identity = 59/171 (34.50%), Postives = 95/171 (55.56%), Query Frame = 3
Query:  144 YESPWHIYAMNWSVR-RDKNYRLAIASLLGQYPNRVEIVQL---DDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPD--LLATSGDFLRVWRISDE---DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIA 629
            Y +PW  +A++W  + +  +  +A+ SL  +  N +++++L   DD    +      + +  YP TK ++ P       D  LLA++   LR+W+   E   D  +  ++ L+ +  +    PLTSFDW + +P  I  SS+DTTCT+WDI  +   TQLIAHDKEVYD+A
Sbjct:   47 YNAPWIPFALDWLKQGKYSSEWIAMGSLNEEPNNMIQLLKLITGDDGNSHLEK-AQAATDLEYPVTKLLWNPSSVGSNTDSQLLASTDQQLRLWKTDFEAGIDSPLLCQASLSTHVKTHNNAPLTSFDWCKTDPSYIVVSSLDTTCTVWDIVAQQSKTQLIAHDKEVYDVA 216          

HSP 2 Score: 29.261 bits (64), Expect = 1.853e-22
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  679 RVFDLRDKEHSTIIYE 726
            R+FDLR  +HSTIIYE
Sbjct:  235 RMFDLRSLDHSTIIYE 250          
BLAST of CB611069 vs. ExPASy Swiss-Prot
Match: YP247_YEAST (WD repeat-containing protein YPL247C OS=Saccharomyces cerevisiae GN=YPL247C PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.842e-18
Identity = 54/183 (29.51%), Postives = 96/183 (52.46%), Query Frame = 3
Query:  129 SEIYTYESPWHIYAMNWSVRRDKNYRLAIASLLGQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSGDFLRVWRISDEDRRVELK---SLLNGNK----------NSEYCG---PLTSFDWNEAEPRRIGTSSIDTTCTIWDIE-REAVDTQLIAHDKEVYDI 626
            + +  Y+S + ++ ++WS     +  + + S      N+++++  +D    +  +  +  +  YP +K  ++P +    P  LAT  D LR+W +S E+R+ + +   SL   N+          + +  G   P+TSFDWN  +   I +SSIDTTC +WD++    V TQLIAHD EV+D+
Sbjct:  120 ASVCEYQSHYPLFGLDWSA----DDYVCLGSYKEDSRNKLQVLHSNDL---LSWESVVDADVVYPVSKIQWVPSQ--LYPRKLATCSDSLRIWSVSPEERQFQEQINLSLCKYNRQHPANPAAADDMKVIGTFPPITSFDWNTVDTNLIISSSIDTTCIVWDLQSSHYVKTQLIAHDSEVFDV 293          

HSP 2 Score: 29.261 bits (64), Expect = 8.842e-18
Identity = 13/16 (81.25%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  679 RVFDLRDKEHSTIIYE 726
            RVFDLR   HSTIIYE
Sbjct:  313 RVFDLRSLAHSTIIYE 328          
The following BLAST results are available for this feature:
BLAST of CB611069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
LWD1_ARATH1.774e-9385.39WD repeat-containing protein LWD1 OS=Arabidopsis t... [more]
LWD2_ARATH2.543e-8981.01WD repeat-containing protein LWD2 OS=Arabidopsis t... [more]
DCAF7_MOUSE7.079e-5656.67DDB1- and CUL4-associated factor 7 OS=Mus musculus... [more]
DCAF7_HUMAN7.079e-5656.67DDB1- and CUL4-associated factor 7 OS=Homo sapiens... [more]
TTG1_ARATH7.700e-5555.43Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis ... [more]
DCAF7_DICDI1.707e-5455.62DDB1- and CUL4-associated factor 7 homolog OS=Dict... [more]
YBE8_SCHPO1.853e-2234.50Uncharacterized WD repeat-containing protein C17D1... [more]
YP247_YEAST8.842e-1829.51WD repeat-containing protein YPL247C OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_F06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611069 ID=CB611069; Name=CB611069; organism=Citrus sinensis; type=EST; length=735bp
GGGAGCCCTAAGCCTCTCTTCAATCAATAATATTCACAACCCATTTCGTA
GTTGTTGAGTTGAAGTGAAAGTAATGGGCGTGAGTAGTGACCCGAATCTC
GACGGGTCGGACGAGCAGCAAAAAAAGATCGGAGATCTATACCTATGAGT
CACCGTGGCACATCTACGCCATGAACTGGAGCGTCCGTCGCGACAAGAAT
TACCGACTCGCTATCGCCAGCCTCCTCGGACAGTATCCGAACCGGGTCGA
AATTGTTCAGCTGGATGATTCCACTGGCGAGATCCGTGCCGACCCCAACC
TCTCTTTCGAACACCCGTACCCACCTACCAAAACCATTTTCATACCCGAC
AAGGAGTGCCAAAAACCCGACCTTTTGGCCACCTCCGGCGATTTCCTCCG
CGTGTGGAGAATCTCCGATGAGGACCGGCGCGTGGAGCTCAAGAGTTTGT
TGAATGGTAACAAGAACAGCGAATACTGCGGCCCGCTGACCTCGTTTGAC
TGGAACGAAGCGGAACCGAGGCGAATTGGGACGTCTAGTATCGACACGAC
GTGTACGATTTGGGATATCGAGAGAGAAGCCGTCGATACGCAGCTTATCG
CTCACGATAAAGAGGTTTACGACATCGCGTGGGGCGGTGTCGGCGTTTTT
CGCCTCCGCCTCCGCTGATGGGTCCGTTAGAGTTTTCGATTTGCGCGACA
AGGAACACTCGACGATCATTTACGAGATCTCCGAA
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