CB611075

Overview
NameCB611075
Unique NameCB611075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYLC_SCHPO (Putative leucyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPAC26F1.13c PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.236e-28
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  212 RRDRLLEIESKVHTWWEESNVFNAE-PGERPPNPESGEK---FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFG 526
            +RD L+E+E K    W+E   F  + P E  P  E  +K   FFGN P+PYMNG LHLGHAF+ SK+EF  A+ RL G  VL P GFHCTGMPI ASAD+L+REI+ FG
Sbjct:   25 KRDTLIELEKKYQQKWQEEKAFEVDAPLEDVPIDELRKKYPKFFGNMPYPYMNGALHLGHAFTLSKVEFTTAFERLNGKRVLFPMGFHCTGMPICASADRLSREIEMFG 133          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYLC_MOUSE (Leucyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Lars PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.236e-28
Identity = 62/115 (53.91%), Postives = 71/115 (61.74%), Query Frame = 2
Query:  200 KSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGE-KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVF 541
            K  A+ D L EIE +    WE   VF           +S + K+F  FP+PYMNG LHLGH FS SK EFA  Y RLKG + L PFG HCTGMPIKA ADKL REI+ +G PP F
Sbjct:    5 KGTAKVDFLKEIEKEAQQKWEAEKVFEVSASRLEKQKQSSKGKYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKSCLFPFGLHCTGMPIKACADKLKREIELYGCPPDF 119          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYLC_CAEEL (Leucyl-tRNA synthetase OS=Caenorhabditis elegans GN=lrs-1 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.370e-27
Identity = 59/107 (55.14%), Postives = 69/107 (64.49%), Query Frame = 2
Query:  221 RLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVF 541
            +L EIE  +   WE    F A+  +     +   K+   FPFPYMNG LHLGH FS SK EFAA + RL+G  VL PFGFHCTGMPIKA ADKL RE++ FG PP F
Sbjct:   13 QLQEIEKSIQELWESKKAFEADARD-----DGKPKYLVTFPFPYMNGRLHLGHTFSASKCEFAAGFQRLQGKEVLFPFGFHCTGMPIKACADKLKREMQDFGYPPNF 114          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYLC_PONAB (Leucyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=LARS PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.895e-27
Identity = 60/114 (52.63%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  200 KSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVF 541
            K  A+ D L +IE ++   W+   VF             G K+F  FP+PYMNG LHLGH FS SK EFA  Y RLKG   L PFG HCTGMPIKA ADKL REI+ +G PP F
Sbjct:    5 KGTAKVDFLKKIEKEIQQKWDTERVFEVNASSLEKQTSKG-KYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKCCLFPFGLHCTGMPIKACADKLKREIELYGCPPDF 117          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYLC_HUMAN (Leucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.895e-27
Identity = 60/114 (52.63%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  200 KSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVF 541
            K  A+ D L +IE ++   W+   VF             G K+F  FP+PYMNG LHLGH FS SK EFA  Y RLKG   L PFG HCTGMPIKA ADKL REI+ +G PP F
Sbjct:    5 KGTAKVDFLKKIEKEIQQKWDTERVFEVNASNLEKQTSKG-KYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKCCLFPFGLHCTGMPIKACADKLKREIELYGCPPDF 117          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYLC_NEUCR (Leucyl-tRNA synthetase, cytoplasmic OS=Neurospora crassa GN=leu-6 PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 8.428e-25
Identity = 55/123 (44.72%), Postives = 72/123 (58.54%), Query Frame = 2
Query:  188 TESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNP----------ESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFG 526
            T+  K   +RD L+EIE +    WE+  VF  +       P          +   KFFG   +PYMNG LH GHAFSFSK+E+   + R++G   L P G+HCTG+PIKASADKL +EI+ FG
Sbjct:   21 TKELKGTEKRDTLIEIEKRYQQKWEQEGVFEVDAPSTAEFPLDAITPDELRQKHPKFFGTIAYPYMNGRLHAGHAFSFSKIEYHTGFARMQGKRALFPQGYHCTGLPIKASADKLVKEIEMFG 143          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYLC_DICDI (Leucyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=leuS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.428e-25
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 2
Query:  203 SFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVF 541
            S A+ D +   E +V   WE    F  +  + P       K+   FP+PYMNG LH+GH F+ +K EF   + RL G  VL PF FHCTGMPIKA ADKL +EI+QFG PPVF
Sbjct:    2 STAKLDFVRAYEKEVQNKWESDKQFEIDALDAPDAEHP--KYLATFPYPYMNGRLHVGHVFTITKAEFMCQFQRLMGKRVLFPFAFHCTGMPIKACADKLKKEIEQFGCPPVF 112          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYLC_YEAST (Leucyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=CDC60 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.383e-21
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 2
Query:  209 ARRDRLLEIESKVHTWWEESNVFNAEPG---ERPPNPESGE------KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFG 526
            ARRD L+ IE K    W E + F  +     + P   +S E      KF  +  +PYMNG +H GH F+ SK+EF+  + R+ G   L P GFHCTGMPI A ADKL RE + FG
Sbjct:   11 ARRDALIAIEKKYQKIWAEEHQFEIDAPSIEDEPITMDSEELHRTYPKFMSSMAYPYMNGVMHAGHCFTLSKVEFSIGFERMNGKRALFPLGFHCTGMPILACADKLKREAELFG 125          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYLC_ENTBH (Probable leucyl-tRNA synthetase, cytoplasmic OS=Enterocytozoon bieneusi (strain H348) GN=EBI_21702 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.011e-18
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 2
Query:  320 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFG 526
            +KFF  FP+PYMNG LHLGH FS SK +  + Y  ++G NVL PFGFHCTGMPI ASA KL  E+   G
Sbjct:   32 KKFFITFPYPYMNGKLHLGHLFSISKADIFSYYKEMQGFNVLFPFGFHCTGMPISASAKKLKMELANEG 100          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYLC_ENCCU (Probable leucyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU06_0280 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.430e-18
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  323 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREI 514
            KFF  F +PYMNG LHLGH FS SK +F + Y  L+G NVL PF FHCTGMPI ASA KLA E+
Sbjct:   28 KFFVTFTYPYMNGRLHLGHLFSISKADFFSYYKELQGYNVLFPFSFHCTGMPISASAKKLAEEL 91          
The following BLAST results are available for this feature:
BLAST of CB611075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
SYLC_SCHPO6.236e-2855.96Putative leucyl-tRNA synthetase, cytoplasmic OS=Sc... [more]
SYLC_MOUSE6.236e-2853.91Leucyl-tRNA synthetase, cytoplasmic OS=Mus musculu... [more]
SYLC_CAEEL2.370e-2755.14Leucyl-tRNA synthetase OS=Caenorhabditis elegans G... [more]
SYLC_PONAB6.895e-2752.63Leucyl-tRNA synthetase, cytoplasmic OS=Pongo abeli... [more]
SYLC_HUMAN6.895e-2752.63Leucyl-tRNA synthetase, cytoplasmic OS=Homo sapien... [more]
SYLC_NEUCR8.428e-2544.72Leucyl-tRNA synthetase, cytoplasmic OS=Neurospora ... [more]
SYLC_DICDI8.428e-2548.67Leucyl-tRNA synthetase, cytoplasmic OS=Dictyosteli... [more]
SYLC_YEAST7.383e-2144.35Leucyl-tRNA synthetase, cytoplasmic OS=Saccharomyc... [more]
SYLC_ENTBH2.011e-1860.87Probable leucyl-tRNA synthetase, cytoplasmic OS=En... [more]
SYLC_ENCCU3.430e-1865.63Probable leucyl-tRNA synthetase, cytoplasmic OS=En... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_D06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611075 ID=CB611075; Name=CB611075; organism=Citrus sinensis; type=EST; length=631bp
GCGGGGGTTGATTGGAACCCGTAAACACAAACCAGATAACAGCATCTCAA
GATTCCCAAACCCTAGTATAAAAAGCTCTCTTTCGCTGGCTTTATCTCTA
CTGAGACAAAACGCCCCGTTTTTGCACCGCAATGCCCTTCGGTTTTCGGC
CCTGAATCACAGTTTTTCTCAGTTCCACGATATGGCAACAGAAAGTGGGA
AAAGCTTTGCGAGGAGAGATCGTCTCCTGGAGATTGAGTCAAAGGTCCAC
ACTTGGTGGGAGGAGAGTAATGTTTTCAATGCTGAACCTGGCGAAAGGCC
TCCGAATCCTGAAAGTGGGGAAAAGTTCTTTGGAAACTTTCCATTTCCTT
ATATGAATGGCTATTTGCATCTAGGGCATGCATTCTCATTTTCCAAGCTT
GAATTTGCTGCGGCGTATCATAGATTGAAAGGTGCTAATGTGCTTTTGCC
ATTTGGTTTCCACTGCACTGGTATGCCCATTAAGGCCTCAGCTGATAAGC
TTGCTAGGGAAATTAAGCAGTTTGGGAATCCACCTGTATTTCTCAAAGAA
GCGGAGGAGGAAGAAAGTCCACAGCCAGAAGAAGCTGAGGATGCAAATGG
AGGTGCTCCACCGGATAAGTTTAAGAGCAAG
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