CB611092

Overview
NameCB611092
Unique NameCB611092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12023 contig Csv1_Contig12023:10..487. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.664e-41
Identity = 75/113 (66.37%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  130 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            G GW +AHATFY              YGNLYS+GYGTNTAALSTALFNNG+SCGACFEI+C ND +WC PGSI VTATNFC          GGWCNPPQQHFDLSQPVF++I+
Sbjct:   24 GGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIA 136          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.462e-39
Identity = 71/114 (62.28%), Postives = 83/114 (72.81%), Query Frame = 1
Query:  127 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            YG GW +AHATFY              YGNLYS+GYGT+TAALSTALFNNG+SCG+CFEI+C ND +WC PGSI VTATNFC          GGWCNPP +HFDL+QPVF++I+
Sbjct:   22 YGGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIA 135          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 3.257e-39
Identity = 72/114 (63.16%), Postives = 80/114 (70.18%), Query Frame = 1
Query:  127 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            Y  GW +AHATFY              YGNLYS+GYGTNTAALSTALFNNG+SCGACFEIKC +D  WC PG+I VTATNFC          GGWCNPP  HFDLSQPVF++I+
Sbjct:   26 YDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIA 139          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.702e-38
Identity = 71/115 (61.74%), Postives = 80/115 (69.57%), Query Frame = 1
Query:  130 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            G  W  AHATFY              YGNLYS+GYGTNTAALST+LFN+G SCGACFEIKCVNDP+WC PG  S+FVTATNFC          GGWCNPP+ HFDL+ PVF +I+
Sbjct:   31 GGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIA 145          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.368e-37
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 1
Query:  130 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            G  W +AHATFY              YGNLYS+GYGTNTAALSTALFNNGMSCGACFE+KC NDP+WC  G  SI +TATNFC          GGWCNPP++HFDL+ PVF +I+
Sbjct:   28 GGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIA 142          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.048e-37
Identity = 68/114 (59.65%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  127 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            Y  GW +A ATFY              YGNLYS+GYGTNTAALSTALFN G SCGACF+IKCV+DP+WC  G+I VT TNFC          GGWCNPPQ HFDL+QP+F +I+
Sbjct:   25 YSSGWVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIA 138          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.513e-36
Identity = 70/114 (61.40%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  130 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQI 465
            G  W +AHATFY              YGNLYS+GYG NTAALSTALFNNG SCGACFEIKC +DPRWC PG  SI VTATNFC          GGWCNPP++HFDL+ P+F +I
Sbjct:   33 GGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKI 146          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.976e-36
Identity = 68/115 (59.13%), Postives = 78/115 (67.83%), Query Frame = 1
Query:  130 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            G GW  AHATFY              YGNLYS+GYG NTAALSTALFNNG SCGACFE+KC +DP+WC  G  SIF+TATNFC          GGWCNPP+ HFDL+ P+F +I+
Sbjct:   28 GGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIA 142          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.580e-36
Identity = 67/115 (58.26%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  130 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            G  W +AHATFY              YGNLYS+GYG NTAALSTALFNNG+SCG+CFE+KC+NDP WC PG  SI +TATNFC          GGWCNPP++HFDL+ P+F  I+
Sbjct:   29 GGPWINAHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIA 143          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.853e-35
Identity = 65/111 (58.56%), Postives = 75/111 (67.57%), Query Frame = 1
Query:  136 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            GW   HATFY              YGNLY +GYGTNTAALSTALFNNG++CGAC+E+KC +DPRWC   +I VTATNFC          GGWCNPP QHFDL++P F QI+
Sbjct:   29 GWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIA 139          
The following BLAST results are available for this feature:
BLAST of CB611092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA1_ARATH2.664e-4166.37Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP10_ARATH1.462e-3962.28Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXP15_ARATH3.257e-3963.16Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP16_ARATH4.702e-3861.74Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA4_ARATH1.368e-3760.87Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP14_ARATH3.048e-3759.65Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA3_ARATH1.513e-3661.40Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA6_ARATH1.976e-3659.13Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA9_ARATH2.580e-3658.26Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA8_ARATH2.853e-3558.56Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_C08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611092 ID=CB611092; Name=CB611092; organism=Citrus sinensis; type=EST; length=478bp
GGGGATCACTCACAGCAAGAACCTGATTTTCTCTCTTACAAAAAGATACG
CAAGCAAAAGGGTTTCAGGAACATGGCATTTCTTGGGCTGCTGTTGTTGG
GGATTCTTTCTTTAGTCTCATCTGTTTATGGCCAGGGATGGACTGATGCT
CATGCCACTTTTTATGGTGGGGGTGATGCCTCTGGTACAATGGGTGGCGC
TTGTGGGTATGGAAACTTATACAGCGAGGGATATGGGACAAACACAGCAG
CTCTGAGCACTGCACTTTTCAACAATGGCATGAGCTGTGGGGCTTGTTTT
GAGATCAAGTGTGTTAATGACCCAAGATGGTGCCGTCCGGGCTCCATTTT
TGTTACTGCCACAAATTTTTGCCCTCCAAATAATGCTCTCCCAAACAATG
CCGGTGGCTGGTGCAATCCTCCCCAGCAACATTTTGACCTCTCTCAGCCT
GTGTTTGAACAAATTAGCTCAGTACAAA
back to top