CB611109

Overview
NameCB611109
Unique NameCB611109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB611109_ssr33 microsatellite CB611109_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
CB611109_ssr166 microsatellite CB611109_ssr166:166..177. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9890 contig Csv1_Contig9890:6..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611109 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.816e-96
Identity = 160/220 (72.73%), Postives = 191/220 (86.82%), Query Frame = 3
Query:  147 EAPPSEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPS-NNPLEPVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFV 803
            E   S  ++KKWGTH+MGAPA P AHPDNQ+AA+W A + QQ  +QPYV YSP++ P+ NNPLEPVI  F+ WS KAET+ARN+WHNLKTGPS+SE AWGKVNLTAKAIT+GGFESLF+QIF T+PNE LKKTFACYLSTTTGPVAGT+YLS ARVAFCSDRPL FTAPSGQE+WSYY+V++PLAN+++VNPV VKE   +KY+++ TV+GH+FWFMGFV
Sbjct:   28 EPSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFV 247          
BLAST of CB611109 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.048e-43
Identity = 91/233 (39.06%), Postives = 133/233 (57.08%), Query Frame = 3
Query:  135 STLTEAPPSEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPI---DKPSNNPLEPVIHAFNNW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFV 803
            ST  +AP       K   H        S  PD + A+S +A +       PY+  SP    D    + +E V      W       + K E++A N W +L+T PS ++AA G++  + K   EGG+E +F+Q F TDP E+L  +FACYLST+ GPV G LY+S+A++A+CSD PL +     Q  WSYYKV+IPL  + +VNP     N ++KY+++++V+ HEFWFMGF+
Sbjct:   53 STPVKAPSRTSSGSKKSVHWSPELVSGSQEPDQKAASSSSAGSN------PYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSY-KNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFL 278          
BLAST of CB611109 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.373e-42
Identity = 90/207 (43.48%), Postives = 124/207 (59.90%), Query Frame = 3
Query:  204 PAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPSNNPLEPVIHAFNNW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFV 803
            P  P   P    A +  AE+       PYV  SP  +   N ++ V      W       + KAE +A N W +LKTGPSV++AA  ++    K + EGG+E +FKQ F   P+EKL KT+ACYLST+ GPV G +YLST ++AF SD PL +     Q  WSYYKV++P   + +VNP T + N SDKY+++++++ HEFWFMGFV
Sbjct:   45 PPPPQPIPTGAAATTMPAESN------PYVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY-KEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFV 241          
BLAST of CB611109 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.581e-30
Identity = 79/225 (35.11%), Postives = 118/225 (52.44%), Query Frame = 3
Query:  162 EEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPI---DKPSNNPLEPVIHAFNNW-------STKAETIARNIW-HNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFV 803
            + E   W   ++     P     ++KA S ++  R      PYV  +P    D      +E V      W       + KAE++A N W H L+       AA G++  + K + EGG+E +F+Q F T P E+L+ +FACYLST+ GPV G LY+STA++A+CSD  L               V+IPL  + SVNP     N ++KY+++++V+ HEFWFMGF+
Sbjct:   24 DRENLHWNPELVSESPAP-----DEKALSSSSAARSN----PYVARAPTETSDASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR-------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGFL 217          
BLAST of CB611109 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.614e-29
Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = 3
Query:  267 QQIYHQPYVEYSPI----DKPSNNPLE-PVIHAFNNWSTKAETIARN---------IWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFV 803
            QQ+   P V+ SP     D  S N L+ P    F+  + K +++ R          +    K GP ++E    K++L A+ +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G+    +YKV IPL  I+ VN        S KY+++VTV+G +FWFMGF+
Sbjct:    8 QQLITFPAVKTSPAGYLPDPASINKLQIPTSSKFSFLTGKGKSMLRKKKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFL 200          
BLAST of CB611109 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.283e-28
Identity = 58/132 (43.94%), Postives = 86/132 (65.15%), Query Frame = 3
Query:  408 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFV 803
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G  +  +YKV IPL  I+ VN     +  S KY++IVT++  +FWFMGFV
Sbjct:   69 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFV 200          
BLAST of CB611109 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.313e-28
Identity = 57/132 (43.18%), Postives = 86/132 (65.15%), Query Frame = 3
Query:  408 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFV 803
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT G +AG L++S+ ++AFCS+R +  T+P G     +YKV IPL  I+ VN     +  S +Y+++VTV+ ++FWFMGFV
Sbjct:   61 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFV 192          
BLAST of CB611109 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.629e-27
Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = 3
Query:  369 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFV 803
            K +     +    K  P ++E    K++L A+ +  GG E +FK++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G     +YKV IPL  I  VN     +  S KY+++VTV+G +FWFMGF+
Sbjct:   55 KTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFL 199          
BLAST of CB611109 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27
Identity = 69/185 (37.30%), Postives = 102/185 (55.14%), Query Frame = 3
Query:  276 YHQPYVEY-SPIDKPSNNPLEPVIHAFNNW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCF-TAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFV 803
            Y  PYV   SP         + V+   N         + KAE +   +  +LK  PS+S+AA  +++   K I EGG E +F++ F     EKL  +F CY+STT+GPV G +Y+S  R+AFCSD  +   ++  G    +YYKV++    ISS++  T     S++Y+ +VT +G EFWFMGFV
Sbjct:   27 YDNPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFMGFV 211          
The following BLAST results are available for this feature:
BLAST of CB611109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH2.816e-9672.73GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEM_ARATH8.048e-4339.06GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH1.373e-4243.48GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML3_ARATH4.581e-3035.11Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML8_ARATH6.614e-2936.79Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML6_ARATH3.283e-2843.94GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH7.313e-2843.18GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH1.629e-2740.00GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
GEML2_ARATH3.629e-2737.30GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_H03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611109 ID=CB611109; Name=CB611109; organism=Citrus sinensis; type=EST; length=805bp
GGGGACCGTGAATAAACAATAAATCCATCAGAATTTATTTATTTTTGTTC
TCATAGCAATAGCATCAACCTTCCAGTCAATCGACAACCAGCATCACCAT
GACAAGCACACCAGATCCAGAAGAAAAATTGTCAAGCACTCTGACAGAAG
CTCCACCTTCAGAAGAAGAAAGAAAGAAATGGGGTACCCATATCATGGGA
GCGCCAGCAGTGCCTAGTGCTCACCCAGACAATCAAAAGGCAGCCTCATG
GAACGCCGAAAACCGCCAGCAAATCTATCATCAGCCTTATGTTGAGTACT
CTCCTATCGACAAGCCAAGCAACAACCCTTTGGAGCCTGTAATTCACGCG
TTCAATAATTGGAGCACCAAAGCTGAGACCATTGCCCGCAACATCTGGCA
TAACCTGAAAACCGGTCCCTCTGTGTCGGAAGCTGCATGGGGGAAGGTGA
ATTTGACAGCGAAAGCAATAACAGAGGGCGGATTTGAGTCTCTCTTCAAG
CAGATTTTTGCAACTGATCCGAATGAGAAGCTAAAGAAGACCTTTGCGTG
TTATCTTTCTACAACAACTGGTCCTGTTGCTGGAACACTCTATTTATCAA
CAGCCCGTGTGGCTTTCTGCAGTGATCGTCCCTTGTGTTTTACTGCTCCA
TCTGGGCAGGAAGCTTGGAGCTACTACAAGGTTATGATACCTTTGGCGAA
TATAAGCTCAGTCAATCCAGTGACAGTAAAAGAAAATGCATCAGACAAGT
ACATGAAGATTGTAACTGTGGAGGGACATGAATTTTGGTTCATGGGCTTT
GTCAA
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