CB611120

Overview
NameCB611120
Unique NameCB611120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5791 contig Csv1_Contig5791:1395..1804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB611120 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.006e-23
Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    4 GARCAATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVRKVESNNFLPKD 189
            GARC ATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD  DEL N RKVE+   L KD
Sbjct:  399 GARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVEAQGLLSKD 460
[Close]
BLAST of CB611120 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.044e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    4 GARCAATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVRKV 162
            GARC ATLLHEMKRRG+DCRFGV+SMCIG+GMGAAAVFERG   DELC+VRKV
Sbjct:  391 GARCVATLLHEMKRRGKDCRFGVVSMCIGSGMGAAAVFERGGGVDELCDVRKV 443
[Close]
BLAST of CB611120 vs. ExPASy Swiss-Prot
Match: THIK5_ARATH (3-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidopsis thaliana GN=KAT5 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.154e-19
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 GARCAATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVR 156
            GARC ATLLHEMKRRG+DCRFGVISMCIGTGMGAAAVFERGD  D L N R
Sbjct:  400 GARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDSVDNLSNAR 450
The following BLAST results are available for this feature:
BLAST of CB611120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
THIK2_ARATH5.006e-2380.653-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
THIK1_ARATH1.044e-2084.913-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
THIK5_ARATH1.154e-1986.273-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_F11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611120 ID=CB611120; Name=CB611120; organism=Citrus sinensis; type=EST; length=412bp
GGGGGTGCCCGCTGTGCTGCAACTCTATTGCATGAGATGAAGAGGCGAGG
CAGAGACTGCCGCTTTGGAGTGATATCAATGTGCATAGGCACAGGAATGG
GGGCAGCAGCTGTTTTCGAAAGAGGTGACTGTGCCGATGAGCTTTGCAAT
GTCAGGAAAGTGGAAAGCAACAATTTCTTACCTAAGGATGTTCTGTAGAT
TACCATTTGTCTGCTGCAGCACGTTCTTGTGGAACGATCATATTGTGTTT
GGAATCCGAGTATTTTTAATGAACAGTTATATGTAATAAGATTGCTTTGT
TGTGATCACAAAGCCGACCACAGGTCACACAGCTGTCTGTATCTTCGGTT
TTGATATGATTAATTTAAATATCGTCACACTATAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
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