CB611121

Overview
NameCB611121
Unique NameCB611121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13673 contig Csv1_Contig13673:61..451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: ISCU_HUMAN (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.141e-28
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    4 EETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASE 261
            +E G+IVDA FKTFGCGSAIASSS+ATEWVKG  ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+      +E
Sbjct:   80 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAE 165          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: ISCU_MOUSE (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.715e-28
Identity = 60/88 (68.18%), Postives = 71/88 (80.68%), Query Frame = 1
Query:    4 EETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEAE 267
            +E G+IVDA FKTFGCGSAIASSS+ATEWVKG  ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+       E +
Sbjct:   81 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQESKKEEPEKQ 168          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: ISU1_DEBHA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Debaryomyces hansenii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.424e-27
Identity = 62/90 (68.89%), Postives = 71/90 (78.89%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT--KPSAASEA 264
            D+ETG I D  FKTFGCGSAIASSS  TE VKG  ++E + IKNT IAK LSLPPVKLHCSMLAEDAIK+AVKDY +KR+  +P+   EA
Sbjct:   82 DDETGVIKDVKFKTFGCGSAIASSSYLTELVKGKTIEEAVKIKNTAIAKELSLPPVKLHCSMLAEDAIKSAVKDYRSKRSVKQPTLGPEA 171          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: ISU1_YEAST (Iron sulfur cluster assembly protein 1, mitochondrial OS=Saccharomyces cerevisiae GN=ISU1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.684e-26
Identity = 58/86 (67.44%), Postives = 67/86 (77.91%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAAS 258
            ++ TG I D  FKTFGCGSAIASSS  TE V+G  + +   IKNTEIAK LSLPPVKLHCSMLAEDAIKAA+KDY++KR  P+  S
Sbjct:   80 NDSTGVIEDVKFKTFGCGSAIASSSYMTELVQGMTLDDAAKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKSKRNTPTMLS 165          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: ISU1_KLULA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Kluyveromyces lactis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.400e-25
Identity = 56/79 (70.89%), Postives = 66/79 (83.54%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            ++ETG I +  FKTFGCGSAIASSS  TE V+G  +++   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY+AKR
Sbjct:   96 NDETGVIENVKFKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYQAKR 174          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_RICPR (NifU-like protein OS=Rickettsia prowazekii GN=nifU PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   19 IVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            I DA FKTFGCGSAIASSS+ TEW+KG  +++   IKNTEIAK LSLPPVKLHCS+LAEDAIKAA+ DY+ KR
Sbjct:   53 ITDAKFKTFGCGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQKR 125          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAP (NifU-like protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nifU PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.388e-25
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTK 243
            E G I DACFKT+GCGSAIASSS+ TEW+KG  + E  +IKNT I + L LPPVK+HCS+LAEDAIKAA+ DY++K+ K
Sbjct:   49 EQGIIEDACFKTYGCGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYKSKKNK 127          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAI (NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nifU PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.119e-25
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            E G I DACFKT+GCGSAIASSS+ TEWVKG  ++E  SIKNT I + L LPPVK+HCS+LAEDAIKAA+ DY+ K+
Sbjct:   49 EKGIIEDACFKTYGCGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYKRKK 125          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: ISU1_CANGA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Candida glabrata GN=ISU1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.949e-25
Identity = 56/80 (70.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT 240
            +++TG I D  FKTFGCGSAIASSS  TE V G  + +   IKNT IAK LSLPPVKLHCSMLAEDAIKAA+KDY++KRT
Sbjct:  128 NDKTGVIEDVKFKTFGCGSAIASSSYMTELVHGMTLDDAAKIKNTTIAKELSLPPVKLHCSMLAEDAIKAAIKDYKSKRT 207          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: ISU2_YEAST (Iron sulfur cluster assembly protein 2, mitochondrial OS=Saccharomyces cerevisiae GN=ISU2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.075e-25
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            ++++G I +  FKTFGCGSAIASSS  TE V+G  + E + IKNTEIAK LSLPPVKLHCSMLAEDAIKAA+KDY+ KR
Sbjct:   72 NDKSGIIENVKFKTFGCGSAIASSSYMTELVRGMSLDEAVKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKTKR 150          
The following BLAST results are available for this feature:
BLAST of CB611121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISCU_HUMAN5.141e-2869.77Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISCU_MOUSE6.715e-2868.18Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISU1_DEBHA7.424e-2768.89Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU1_YEAST3.684e-2667.44Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU1_KLULA1.400e-2570.89Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_RICPR1.829e-2573.97NifU-like protein OS=Rickettsia prowazekii GN=nifU... [more]
NIFU_BUCAP2.388e-2565.82NifU-like protein OS=Buchnera aphidicola subsp. Sc... [more]
NIFU_BUCAI3.119e-2568.83NifU-like protein OS=Buchnera aphidicola subsp. Ac... [more]
ISU1_CANGA6.949e-2570.00Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU2_YEAST9.075e-2569.62Iron sulfur cluster assembly protein 2, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_G02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611121 ID=CB611121; Name=CB611121; organism=Citrus sinensis; type=EST; length=391bp
GATGAAGAGACTGGTCAGATCGTCGACGCCTGCTTCAAGACCTTTGGCTG
TGGCTCGGCCATCGCTTCTTCTTCTGTTGCAACGGAATGGGTGAAAGGGA
NNCAGATGCAGGAAGTCTTGTCCATTAAAAACACGGAAATTGCAAAACAT
CTTTCTCTACCACCTGTTAAACTGCATTGCAGCATGCTTGCTGAAGATGC
TATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACGTACCAAACCAAGTG
CTGCTTCAGAGGCAGAACTACCTCCAAGGGCTGCTGATGTTTGAAGATAT
TGATGTAAACATTTGAAAATGATGTTAATGTTCTGCCTGTGGAGATGTAT
CAGGATAACTGCACCTCCTAAAGATTGATGTCGGGTGGTGG
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