CB611205 | Citrus Genome Database

Overview


Name	CB611205
Unique Name	CB611205
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	528

Libraries


Library Name	Type
Mature Albedo	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig3221	contig	Csv1_Contig3221:247..773.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CB611205 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 6.124e-13
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1

Query:   82 EKWVIDIERITREKVNGSTVNVGINPSKVVIT 177
            +K+VI IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   76 KKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107

HSP 2 Score: 46.2098 bits (108), Expect = 6.124e-13
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 3

Query:    3 VRKDDEVQVVRGTYKGRE-GKVVQVYRRE 86
            +RKDDEVQVVRG YKG++ GKVVQVYR++
Sbjct:   49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKK 77

BLAST of CB611205 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 6.124e-13
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1

Query:   82 EKWVIDIERITREKVNGSTVNVGINPSKVVIT 177
            +K+VI IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   76 KKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107

HSP 2 Score: 46.2098 bits (108), Expect = 6.124e-13
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 3

Query:    3 VRKDDEVQVVRGTYKGRE-GKVVQVYRRE 86
            +RKDDEVQVVRG YKG++ GKVVQVYR++
Sbjct:   49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKK 77

BLAST of CB611205 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 6.124e-13
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1

Query:   82 EKWVIDIERITREKVNGSTVNVGINPSKVVIT 177
            +K+VI IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   76 KKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107

HSP 2 Score: 46.2098 bits (108), Expect = 6.124e-13
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 3

Query:    3 VRKDDEVQVVRGTYKGRE-GKVVQVYRRE 86
            +RKDDEVQVVRG YKG++ GKVVQVYR++
Sbjct:   49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKK 77

BLAST of CB611205 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 6.124e-13
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1

Query:   82 EKWVIDIERITREKVNGSTVNVGINPSKVVIT 177
            +K+VI IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   76 KKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107

HSP 2 Score: 46.2098 bits (108), Expect = 6.124e-13
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 3

Query:    3 VRKDDEVQVVRGTYKGRE-GKVVQVYRRE 86
            +RKDDEVQVVRG YKG++ GKVVQVYR++
Sbjct:   49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKK 77

BLAST of CB611205 vs. ExPASy Swiss-Prot
Match: RL26_AILME (60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 6.124e-13
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1

Query:   82 EKWVIDIERITREKVNGSTVNVGINPSKVVIT 177
            +K+VI IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   76 KKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107

HSP 2 Score: 46.2098 bits (108), Expect = 6.124e-13
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 3

Query:    3 VRKDDEVQVVRGTYKGRE-GKVVQVYRRE 86
            +RKDDEVQVVRG YKG++ GKVVQVYR++
Sbjct:   49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKK 77

BLAST of CB611205 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 6.124e-13
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1

Query:   82 EKWVIDIERITREKVNGSTVNVGINPSKVVIT 177
            +K+VI IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   76 KKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107

HSP 2 Score: 46.2098 bits (108), Expect = 6.124e-13
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 3

Query:    3 VRKDDEVQVVRGTYKGRE-GKVVQVYRRE 86
            +RKDDEVQVVRG YKG++ GKVVQVYR++
Sbjct:   49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKK 77

BLAST of CB611205 vs. ExPASy Swiss-Prot
Match: RL26_CHICK (60S ribosomal protein L26 (Fragment) OS=Gallus gallus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 6.236e-13
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1

Query:   82 EKWVIDIERITREKVNGSTVNVGINPSKVVIT 177
            +K+VI IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   59 KKYVIYIERVQREKANGTTVHVGIHPSKVVIT 90

HSP 2 Score: 46.2098 bits (108), Expect = 6.236e-13
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 3

Query:    3 VRKDDEVQVVRGTYKGRE-GKVVQVYRRE 86
            +RKDDEVQVVRG YKG++ GKVVQVYR++
Sbjct:   32 IRKDDEVQVVRGHYKGQQIGKVVQVYRKK 60

BLAST of CB611205 vs. ExPASy Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 7.956e-13
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1

Query:   82 EKWVIDIERITREKVNGSTVNVGINPSKVVIT 177
            +K+VI IER+ REK NG+TV+VGI PSKVVIT
Sbjct:   76 KKYVIYIERVQREKANGTTVHVGIRPSKVVIT 107

HSP 2 Score: 46.2098 bits (108), Expect = 7.956e-13
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 3

Query:    3 VRKDDEVQVVRGTYKGRE-GKVVQVYRRE 86
            +RKDDEVQVVRG YKG++ GKVVQVYR++
Sbjct:   49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKK 77

BLAST of CB611205 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.738e-13
Identity = 41/87 (47.13%), Postives = 46/87 (52.87%), Query Frame = 1

Query:   37 GPTRGARAKSFKCIAEKWVIDIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQSVD 297
            G  +G   K  +    KWVI IERITREKVNG+TVNVGI PSKVVIT                           TKFT ED+MQ+VD
Sbjct:   60 GTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSEDVMQNVD 146

BLAST of CB611205 vs. ExPASy Swiss-Prot
Match: RL26_LITLI (60S ribosomal protein L26 OS=Littorina littorea GN=RPL26 PE=2 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 2.386e-11
Identity = 21/31 (67.74%), Postives = 27/31 (87.10%), Query Frame = 1

Query:   82 EKWVIDIERITREKVNGSTVNVGINPSKVVI 174
            +K+V+ IERI REK NG+TV VGI+PSKV+I
Sbjct:   76 KKFVVHIERIQREKANGATVYVGIHPSKVLI 106

HSP 2 Score: 44.669 bits (104), Expect = 2.386e-11
Identity = 21/29 (72.41%), Postives = 27/29 (93.10%), Query Frame = 3

Query:    3 VRKDDEVQVVRGTYKGRE-GKVVQVYRRE 86
            +RKDDEVQVVRG +KG++ GKVVQVYR++
Sbjct:   49 IRKDDEVQVVRGHFKGQQVGKVVQVYRKK 77

The following BLAST results are available for this feature:

BLAST of CB611205 vs. ExPASy Swiss-Prot

BLAST of CB611205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11


Match Name	E-value	Identity	Description
RL26_MOUSE	6.124e-13	71.88	60S ribosomal protein L26 OS=Mus musculus GN=Rpl26...	[more]
RL26_MACFA	6.124e-13	71.88	60S ribosomal protein L26 OS=Macaca fascicularis G...	[more]
RL26_HUMAN	6.124e-13	71.88	60S ribosomal protein L26 OS=Homo sapiens GN=RPL26...	[more]
RL26_BOVIN	6.124e-13	71.88	60S ribosomal protein L26 OS=Bos taurus GN=RPL26 P...	[more]
RL26_AILME	6.124e-13	71.88	60S ribosomal protein L26 OS=Ailuropoda melanoleuc...	[more]
RL26L_HUMAN	6.124e-13	71.88	60S ribosomal protein L26-like 1 OS=Homo sapiens G...	[more]
RL26_CHICK	6.236e-13	71.88	60S ribosomal protein L26 (Fragment) OS=Gallus gal...	[more]
RL26_RAT	7.956e-13	71.88	60S ribosomal protein L26 OS=Rattus norvegicus GN=...	[more]
RL261_ARATH	8.738e-13	47.13	60S ribosomal protein L26-1 OS=Arabidopsis thalian...	[more]
RL26_LITLI	2.386e-11	67.74	60S ribosomal protein L26 OS=Littorina littorea GN...	[more]

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Properties


Property Name	Value
Genbank description	ALBEDO0001_IIIaF_E12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_E12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB611205 ID=CB611205; Name=CB611205; organism=Citrus sinensis; type=EST; length=528bp
GGGTGCGCAAGGACGACGAGGTTCAGGTTGTGCGTGGGACCTACAAGGGG
CGCGAGGGCAAAGTCGTTCAAGTGTATCGCCGAGAAGTGGGTCATTGATA
TCGAGCGCATCACTCGCGAGAAGGTTAATGGATCCACTGTGAATGTGGGA
ATCAACCCATCAAAGGTCGTGATCACCAAGCTCCGTCTGGACAAGGACAG
GAAGTCTTTGCTCGATCGCAAGGCCAAGGGACGTGCCGCCGCCGACAAGG
AGAAGGGTACCAAGTTCACCCCAGAGGATATTATGCAGAGCGTTGACTAA
TTTTGATAAGAGGTTGTTTTTAAAGTTTTTGTTTAATCATAGAATTTATG
GATTTAGGATGTTTTGTTTTGGCAATGTCACTAAGATATTTCTATTGTTA
TTGTGTTATGTCATGAGGATCCGATTATGGGCTTATGTTGGAGATTTAAG
ATACTTCTTTGGATTTTCTCCTCGTCGTTTCAATTTTAATTCTATATTCC
GAAAAAAAAAAAAAAAAAAAAAAAAAAA