CB611213

Overview
NameCB611213
Unique NameCB611213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length406
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2157 contig Csv1_Contig2157:6..411. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611213 vs. ExPASy Swiss-Prot
Match: CYT5_ARATH (Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana GN=CYS5 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.265e-23
Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = 2
Query:   71 FCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETHVVSGTNYRPILVFKDGPSTNK-FEAVIWERXWEDFKSLTSFNP 403
            F  L+ L + ++PL A+     A VGGW PI +  +  V+EIG+FAV+EYNK+S+S LKFE+V  GET VVSGTNYR  +   DG   +K + A++W++ W  F++LTSF P
Sbjct:    7 FLLLLSLVVVLLPLYASA---AARVGGWSPISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGETQVVSGTNYRLKVAANDGDGVSKNYLAIVWDKPWMKFRNLTSFEP 115          
BLAST of CB611213 vs. ExPASy Swiss-Prot
Match: CYT8_ORYSJ (Cysteine proteinase inhibitor 8 OS=Oryza sativa subsp. japonica GN=Os03g0429000 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.965e-15
Identity = 47/117 (40.17%), Postives = 65/117 (55.56%), Query Frame = 2
Query:   68 RFCCLIVLFLSVVPLLAA---GDR-KGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETHVVSGTNYRPILVFKD-GPSTNKFEAVIWERXWEDFKSLTSFNP 403
            R   L+ L L+V    AA   G+R  G LVGGW PI D  + H+ E+G +AV  +   S   L+F  V  GE  VVSG NYR ++   D   +T  + AV++E+ W + + LTSF P
Sbjct:    3 RIPLLLALLLAVSAAAAAQVGGNRGHGPLVGGWSPITDVGDPHIQELGGWAVERHASLSSDGLRFRRVTSGEQQVVSGMNYRLVVSASDPAGATASYVAVVYEQSWTNTRQLTSFKP 119          
BLAST of CB611213 vs. ExPASy Swiss-Prot
Match: CYT1_ORYSJ (Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.627e-15
Identity = 34/91 (37.36%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  134 GALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETHVVSGTNYRPILVFKDGPSTNKFEAVIWERXWEDFKSLTSFNPM 406
            G ++GG +P+ +  + H++++ +FAVTE+NK++ S L+FE +   +  VV+GT Y   +  K+G +   +EA +WE+ W DFK L  F P+
Sbjct:   44 GPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWMDFKELQEFKPV 134          
BLAST of CB611213 vs. ExPASy Swiss-Prot
Match: CYT1_MAIZE (Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.538e-14
Identity = 36/98 (36.73%), Postives = 57/98 (58.16%), Query Frame = 2
Query:  116 AAGDRKGALVGGWKPIE-DPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETHVVSGTNYRPILVFKDGPSTNKFEAVIWERXWEDFKSLTSFNPM 406
            +  D  G L GG K +  +  +  + E+ +FAV E+N+++ + L FE + K +T VV+GT Y   +  KDG     +EA +WE+ WE+FK L  F P+
Sbjct:   32 SVADNAGMLAGGIKDVPANENDLQLQELARFAVNEHNQKANALLGFEKLVKAKTQVVAGTMYYLTIEVKDGEVKKLYEAKVWEKPWENFKQLQEFKPV 129          
BLAST of CB611213 vs. ExPASy Swiss-Prot
Match: CYT4_ARATH (Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana GN=CYS4 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.799e-12
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 2
Query:   80 LIVLFLSVVPLLAA--GDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETHVVSGTNYRPILVFKDGPSTNK-FEAVIWERXWEDFKSLTSFNPM 406
            LI L L ++PL++   G   G  +G  KPI++  +  V+ + ++A+ E+NK+SK  L F  V +G T VVSGT Y   +  KDG    K +EAV+ E+ W   KSL SF  +
Sbjct:    6 LICLSLILLPLVSVVEGLGGGGGLGSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTKYDLKIAAKDGGGKIKNYEAVVVEKLWLHSKSLESFKAL 117          
BLAST of CB611213 vs. ExPASy Swiss-Prot
Match: CYT6_ORYSJ (Cysteine proteinase inhibitor 6 OS=Oryza sativa subsp. japonica GN=Os03g0210200 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.523e-11
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  110 LLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKS-ALKFESVEKGETHVVSGTNYRPILVFKDGPS--TNKFEAVIWERXWEDFKSLTSFN 400
            LLAA     AL  GW PI++  + H+ E+G++A+TE N+ S S  L F  V  GE  VVSG NYR  +    G    T  + AV++E+ W + + L SF+
Sbjct:    9 LLAAVCAAAALPRGWSPIKNIDDPHIQELGRWAITENNRVSPSDELTFHRVTGGEQQVVSGMNYRLEIEAASGGGDVTGSYGAVVFEQEWSNTRKLISFD 108          
The following BLAST results are available for this feature:
BLAST of CB611213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CYT5_ARATH2.265e-2348.21Cysteine proteinase inhibitor 5 OS=Arabidopsis tha... [more]
CYT8_ORYSJ2.965e-1540.17Cysteine proteinase inhibitor 8 OS=Oryza sativa su... [more]
CYT1_ORYSJ8.627e-1537.36Cysteine proteinase inhibitor 1 OS=Oryza sativa su... [more]
CYT1_MAIZE9.538e-1436.73Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1[more]
CYT4_ARATH1.799e-1239.29Cysteine proteinase inhibitor 4 OS=Arabidopsis tha... [more]
CYT6_ORYSJ1.523e-1140.00Cysteine proteinase inhibitor 6 OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_F09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611213 ID=CB611213; Name=CB611213; organism=Citrus sinensis; type=EST; length=406bp
GGGACTCAAGAACCGGAAGTCACGGACTTTGGTGTGAACGGTTACCAAAA
CAACGAAAATGAATCAACGTTTTTGCTGTCTTATTGTTCTCTTTCTCTCC
GTGGTCCCTCTCCTGGCCGCCGGCGACCGTAAAGGAGCGTTGGTTGGGGG
ATGGAAGCCGATAGAGGACCCCAAGGAGAAGCACGTGATGGAGATCGGAC
AGTTCGCGGTGACGGAGTACAACAAACAGTCAAAGAGCGCGTTGAAGTTC
GAGAGCGTGGAGAAGGGCGAGACTCATGTGGTTTCCGGCACCAATTACCG
GCCGATCTTGGTCTTCAAGGACGGACCTTCTACCAATAAATTTGAAGCTG
TCATTTGGGAGAGGGNATGGGAGGATTTCAAGAGTCTCACCTCATTTAAT
CCTATG
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