CF417107

Overview
NameCF417107
Unique NameCF417107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig434 contig Csv1_Contig434:1..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_MICLU (50S ribosomal protein L7/L12 OS=Micrococcus luteus GN=rplL PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.375e-13
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L   GAE K+KVIK VR  TGLGLKE+KE+V+  P  LK GV+KDEA+ I AKL+EVGA V ++
Sbjct:   52 FDVVLASAGAE-KIKVIKVVREITGLGLKEAKEVVDNAPKALKEGVSKDEAEEIKAKLEEVGASVEVK 118
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_LYSSC (50S ribosomal protein L7/L12 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.001e-13
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L   GAE K+KVIK VR  TGLGLKE+KE+V+  P  LK GV+KDEA+ I  KL+EVGA V ++
Sbjct:   53 FDVVLASAGAE-KIKVIKVVREITGLGLKEAKEVVDNAPKALKEGVSKDEAEEIKTKLEEVGASVEVK 119
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_BACWK (50S ribosomal protein L7/L12 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.226e-13
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L   GA+ K+KVIK VR  TGLGLKE+KELV+  P  +K GVTK+EA+ + AKL+EVGA V ++
Sbjct:   53 FDVVLASAGAQ-KIKVIKAVREITGLGLKEAKELVDNTPKAIKEGVTKEEAEEMKAKLEEVGAAVEVK 119
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_BACSU (50S ribosomal protein L7/L12 OS=Bacillus subtilis GN=rplL PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 5.226e-13
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FDL L G G++ K+KVIK VR  TGLGLKE+KELV+  P  LK G+ K+EA+ + AKL+EVGA V ++
Sbjct:   57 FDLILAGAGSQ-KIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEEVGASVEVK 123
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_BACA2 (50S ribosomal protein L7/L12 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.226e-13
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FDL L G G++ K+KVIK VR  TGLGLKE+KELV+  P  LK G+ K+EA+ + AKL+EVGA V ++
Sbjct:   57 FDLILAGAGSQ-KIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEEVGASVEVK 123
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_BACP2 (50S ribosomal protein L7/L12 OS=Bacillus pumilus (strain SAFR-032) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.825e-13
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FDL L G G + K+KVIK VR  TGLGLKE+KELV+  P  LK G+ K+EA+ + AKL+EVGA V ++
Sbjct:   55 FDLVLAGAG-DQKIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEEVGASVEVK 121
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_BACLD (50S ribosomal protein L7/L12 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.825e-13
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FDL L G G + K+KVIK VR  TGLGLKE+KELV+  P  LK G+ K+EA+ + AKL+EVGA V ++
Sbjct:   57 FDLVLAGAG-DQKIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEEVGASVEVK 123
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_BACCN (50S ribosomal protein L7/L12 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.825e-13
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD++L   GA+ K+KVIK VR  TGLGLKE+KELV+  P ++K G +K+EA+ I AKL+EVGA V ++
Sbjct:   53 FDVELANAGAQ-KIKVIKVVREITGLGLKEAKELVDNTPKVIKEGASKEEAEEIKAKLEEVGAAVEVK 119
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_LISMH (50S ribosomal protein L7/L12 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.164e-12
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            F ++L   G ++K+KVIK VR  TGLGLKE+KELV+  P  LK GV KDEA+ I AKL+EVGA V ++
Sbjct:   54 FTVELASAG-DSKIKVIKVVREITGLGLKEAKELVDNAPKALKEGVAKDEAEEIKAKLEEVGANVEVK 120
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_LISIN (50S ribosomal protein L7/L12 OS=Listeria innocua GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.164e-12
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            F ++L   G ++K+KVIK VR  TGLGLKE+KELV+  P  LK GV KDEA+ I AKL+EVGA V ++
Sbjct:   54 FTVELASAG-DSKIKVIKVVREITGLGLKEAKELVDNAPKALKEGVAKDEAEEIKAKLEEVGANVEVK 120
The following BLAST results are available for this feature:
BLAST of CF417107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
RL7_MICLU1.375e-1360.2950S ribosomal protein L7/L12 OS=Micrococcus luteus... [more]
RL7_LYSSC4.001e-1358.8250S ribosomal protein L7/L12 OS=Lysinibacillus sph... [more]
RL7_BACWK5.226e-1357.3550S ribosomal protein L7/L12 OS=Bacillus weihenste... [more]
RL7_BACSU5.226e-1357.3550S ribosomal protein L7/L12 OS=Bacillus subtilis ... [more]
RL7_BACA25.226e-1357.3550S ribosomal protein L7/L12 OS=Bacillus amyloliqu... [more]
RL7_BACP26.825e-1357.3550S ribosomal protein L7/L12 OS=Bacillus pumilus (... [more]
RL7_BACLD6.825e-1357.3550S ribosomal protein L7/L12 OS=Bacillus lichenifo... [more]
RL7_BACCN6.825e-1355.8850S ribosomal protein L7/L12 OS=Bacillus cereus su... [more]
RL7_LISMH1.164e-1257.3550S ribosomal protein L7/L12 OS=Listeria monocytog... [more]
RL7_LISIN1.164e-1257.3550S ribosomal protein L7/L12 OS=Listeria innocua G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-037 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_D5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417107 ID=CF417107; Name=CF417107; organism=Citrus sinensis; type=EST; length=607bp
GGAACAAATTGGGAATTAAAGAAATGCCGAACATGTGCGTAATGATGCCC
GGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGAGGAGGAACTGGGAC
CGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTTCGATTTGAAGCTGG
AAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTAAGGAAGTTAGAGGG
TTTACGGGTTTGGGGTTGAAAGAGTCTAAAGAGTTGGTGGAGAAAGTTCC
CACGTTGTTGAAAAGGGGCGTTACCAAAGACGAGGCTGACAACATTGTTG
CTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGGAGTGAGCTTGACTT
TATCAGAGGAGTGAATGATGAAGAACTTGAAGTCAAGACTTTGGAACTAT
GGCTAGTTAATATCAAAAGGATCCGATTCCGATCAATATCATTCTTCAAC
TATCTGCATGTGAGGGTGATAAACGCATGTCTTTCATAATACACAACATT
CATTGATAAAGCTAGTTTGTTGCGTTCCCAAATAGAATCATTTTACACAA
ACTGGCCTTTATTTTTAAAATTTCATACAACTTCTGTAGAACTGATTTCT
GATGACG
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