CF417110

Overview
NameCF417110
Unique NameCF417110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5855 contig Csv1_Contig5855:1136..1696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417110 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 4.571e-66
Identity = 114/143 (79.72%), Postives = 128/143 (89.51%), Query Frame = 2 
Query:    2 GDIRQYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 430
            GDIRQYNIEDPKNPVLTGQ+WVGGL QKGSPV AV +DG  +Q +VP ++G  LRGGPQMIQLSLDGKRLY TNSLFSAWD QFYPE+ EKGSH++QIDV++EKGG+ INP+FFVDF  EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct:  348 GDIRQYNIEDPKNPVLTGQIWVGGLLQKGSPVKAVGEDGNTFQFEVPQIKGKSLRGGPQMIQLSLDGKRLYATNSLFSAWDRQFYPEIMEKGSHIIQIDVDTEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490
[Close]
BLAST of CF417110 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.592e-50
Identity = 90/143 (62.94%), Postives = 112/143 (78.32%), Query Frame = 2 
Query:    2 GDIRQYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 430
            GDIRQY+I DP+NP L GQ+++GG   +G PV  + D     Q D   V+G ++ GGPQMIQLSLDGKRLYVTNSL+S WD QFYP++ ++GS MLQIDV++EKGG+ +NPNF VDF  EP GP LAHE+RYPGGDC+SDIW+
Sbjct:  330 GDIRQYDITDPRNPKLVGQIFLGGSILRGGPVTVLEDKDLECQPDPVIVKGKKVPGGPQMIQLSLDGKRLYVTNSLYSKWDKQFYPDMIKEGSVMLQIDVDTEKGGLKLNPNFLVDFGKEPGGPVLAHELRYPGGDCSSDIWV 472
[Close]
BLAST of CF417110 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.023e-49
Identity = 90/143 (62.94%), Postives = 113/143 (79.02%), Query Frame = 2 
Query:    2 GDIRQYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 430
            GDIRQY+I D +NP L GQ+++GG  Q+G PV  + D     Q D  +V+G  + GGPQMIQLSLDGKR+YVT+SL+S WD QFYP+L ++G+ MLQIDV+++KGG+ +NPNF VDF  EPDGP LAHE+RYPGGDCTSDIWI
Sbjct:  330 GDIRQYDITDTRNPKLVGQIFLGGSIQRGGPVTVLEDKELECQPDPVTVKGKIIPGGPQMIQLSLDGKRIYVTSSLYSIWDKQFYPDLLKEGAVMLQIDVDTKKGGLKLNPNFLVDFGKEPDGPVLAHEIRYPGGDCTSDIWI 472
[Close]
BLAST of CF417110 vs. ExPASy Swiss-Prot
Match: SBP1_PONAB (Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.077e-49
Identity = 92/143 (64.34%), Postives = 111/143 (77.62%), Query Frame = 2 
Query:    2 GDIRQYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 430
            GD+RQY+I DP+ P LTGQ++VGG   KG PV  + D     Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP+L  +GS MLQ+DV++ KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  330 GDLRQYDISDPQRPRLTGQLFVGGSIVKGGPVQVLEDQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
[Close]
BLAST of CF417110 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 8.660e-49
Identity = 90/143 (62.94%), Postives = 112/143 (78.32%), Query Frame = 2 
Query:    2 GDIRQYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 430
            GD+RQY+I DP+ P LTGQ+++GG   KG PV  + D+    Q +   V+G R+ GGPQMIQLSLDGKRLY+T SL+SAWD QFYP+L  +GS MLQ+DV++ KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  330 GDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
[Close]
BLAST of CF417110 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.477e-48
Identity = 88/143 (61.54%), Postives = 112/143 (78.32%), Query Frame = 2 
Query:    2 GDIRQYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 430
            GDIRQY+I + +NP L GQ+++GG  QKG PV    D     Q D  +V+G  + GGPQMIQLSLDGKR+YVT+S++S WD QFYP++ ++G+ MLQIDV++EKGG+ +NPNF VDF  EPDGP LAHE+RYPGGDC+SDIWI
Sbjct:  330 GDIRQYDITNIRNPKLVGQIFLGGSIQKGGPVAVQEDKELECQPDPVTVKGKIIPGGPQMIQLSLDGKRIYVTSSIYSIWDKQFYPDMLKEGAVMLQIDVDTEKGGLKLNPNFLVDFGKEPDGPVLAHELRYPGGDCSSDIWI 472
[Close]
BLAST of CF417110 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.251e-47
Identity = 89/143 (62.24%), Postives = 109/143 (76.22%), Query Frame = 2 
Query:    2 GDIRQYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 430
            GD+RQY+I DPK P L GQ+++GG   KG PV  + D     Q +   V+G R+ GGPQMIQLSLDG RLYVT SL+SAWD QFYP+L  +GS MLQIDV++ +GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct:  330 GDLRQYDISDPKRPRLVGQIFLGGSIVKGGPVQVLEDQELKCQPEPLVVKGKRVAGGPQMIQLSLDGTRLYVTTSLYSAWDKQFYPDLIREGSVMLQIDVDTVRGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 472
[Close]
BLAST of CF417110 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.133e-47
Identity = 91/143 (63.64%), Postives = 108/143 (75.52%), Query Frame = 2 
Query:    2 GDIRQYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 430
            GDIRQY+I +PK P LTGQ+++GG   KG  V  + D     Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP L  +GS MLQIDV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  330 GDIRQYDISNPKKPRLTGQIFLGGSIVKGGSVQVLEDQELTCQPEPLVVKGKRVPGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPNLIREGSVMLQIDVDTANGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
[Close]
BLAST of CF417110 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 6.862e-46
Identity = 87/143 (60.84%), Postives = 107/143 (74.83%), Query Frame = 2 
Query:    2 GDIRQYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 430
            GDIRQY+I +P+ P L GQ+++GG   +G  V  + D     Q +   V+G R+ GGPQMIQLSLDGKRLY T SL+SAWD QFYP+L  +GS MLQIDV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  330 GDIRQYDISNPQKPRLAGQIFLGGSIVRGGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLDGKRLYATTSLYSAWDKQFYPDLIREGSMMLQIDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
[Close]
BLAST of CF417110 vs. ExPASy Swiss-Prot
Match: SBP2_MOUSE (Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.529e-45
Identity = 86/143 (60.14%), Postives = 107/143 (74.83%), Query Frame = 2 
Query:    2 GDIRQYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 430
            GDIRQY+I +P+ P LTGQ+++GG   +G  V  + D     Q +   V+G R+ GGPQMIQLSLDGKRLY T SL+S WD QFYP+L  +GS MLQ+DV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  330 GDIRQYDISNPQKPRLTGQIFLGGSIVRGGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLDGKRLYATTSLYSDWDKQFYPDLIREGSVMLQVDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
The following BLAST results are available for this feature:
BLAST of CF417110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SBP_ARATH4.571e-6679.72Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1_XENTR4.592e-5062.94Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]
SBP1A_XENLA1.023e-4962.94Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP1_PONAB5.077e-4964.34Selenium-binding protein 1 OS=Pongo abelii GN=SELE... [more]
SBP1_HUMAN8.660e-4962.94Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP1B_XENLA1.477e-4861.54Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP1_BOVIN1.251e-4762.24Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]
SBP1_RAT2.133e-4763.64Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_MOUSE6.862e-4660.84Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]
SBP2_MOUSE1.529e-4560.14Selenium-binding protein 2 OS=Mus musculus GN=Sele... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-040 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_D8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417110 ID=CF417110; Name=CF417110; organism=Citrus sinensis; type=EST; length=562bp
TGGAGATATTCGACAGTATAACATTGAGGATCCCAAAAATCCTGTATTGA
CAGGCCAAGTCTGGGTCGGGGGGCTGTTTCAGAAAGGAAGTCCTGTAGTG
GCTGTAACAGATGATGGTCAGCCATATCAGTCTGATGTTCCATCGGTCCA
GGGGCATCGTTTGAGAGGGGGACCTCAGATGATTCAGTTAAGCTTAGATG
GGAAGCGGCTCTATGTTACCAACTCGCTCTTTAGTGCATGGGATTGTCAA
TTTTATCCTGAACTCAAGGAGAAAGGATCCCACATGTTACAGATTGATGT
CAACTCCGAGAAGGGTGGTATGGCTATCAATCCAAACTTTTTTGTGGACT
TTGAAGCTGAACCTGATGGTCCTGCCCTAGCTCATGAGATGAGGTATCCT
GGTGGTGATTGCACTTCAGATATATGGATTTAACCATCTTAATCTATTCT
GGCAATAAACGGTGTCCATCATGTCCAGATAGGATACCGCTTTGATTGAT
GGGGTGATTACGTTTGGTATGTGGAAGTCAGTGTCCGTTCTGGTTCTGGA
ATAGCCAGTTTA
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