CF417160

Overview
NameCF417160
Unique NameCF417160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1647 contig Csv1_Contig1647:171..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.644e-56
Identity = 122/226 (53.98%), Postives = 142/226 (62.83%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            E++WVKSDWKKDENTAGEWNYT+GKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKT  V  F     +   CGGGYMKLL   +  ++     P ++     I    + +K    L      +  KKEVPCETDQLTHVYT ++RPDATYSILIDN EKQ             K  +    ++      ++ Y          GYDDIPKEI DPDAKKP+DW
Sbjct:   33 ENRWVKSDWKKDENTAGEWNYTSGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTL-VFQFSVKHEQKLDCGGGYMKLLSSSTDQKKFGGDTPYSIMFGPDI-CGYSTKKVHAILNYNDTNHLIKKEVPCETDQLTHVYTLVIRPDATYSILIDNVEKQTGSLYTDWDLLPPKKIKDPEAKKPEDWD-EKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDW 255          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.172e-54
Identity = 121/226 (53.54%), Postives = 139/226 (61.50%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            + +WV S+WKKDEN AGEWNYT+GKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKT  V  F     +   CGGGY+KLL      ++     P ++     I    + +K    L      N  KK+VPCETDQLTHVYTFI+RPDATYSILIDN EKQ             K  +    ++      Q  Y          GYDDIPKEITDPDAKKP+DW
Sbjct:   37 DKRWVTSEWKKDENLAGEWNYTSGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTL-VFQFSVKHEQKLDCGGGYIKLLSGDVDQKKFGGDTPYSIMFGPDI-CGYSTKKVHAILNYNNTNNLIKKDVPCETDQLTHVYTFIIRPDATYSILIDNLEKQTGSLYSDWDLLPAKKIKDPEAKKPEDWEDQE-YIPDPEDKKPEGYDDIPKEITDPDAKKPEDW 259          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.887e-53
Identity = 120/227 (52.86%), Postives = 140/227 (61.67%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTMGQTN-*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            ES+WVKSDWK+DEN AGEWN+T+GKWNGD NDKGIQTSEDYRFYAISA FPEFSNK KT  V  F     +   CGGGYMKLL      ++         S +    +     K +  + T G+TN   KK+VPCETDQLTHVYTFILRPDA+YSILIDN EKQ             K  +    ++       + Y          GYDDIPKEITDP+AKKP+DW
Sbjct:   35 ESKWVKSDWKRDENMAGEWNFTSGKWNGDANDKGIQTSEDYRFYAISAAFPEFSNKGKTL-VFQFSVKHEQKLDCGGGYMKLL--SGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTKGETNHLIKKDVPCETDQLTHVYTFILRPDASYSILIDNVEKQSGSVYTDWDILPPKQIKDPEAKKP-EDWEDKEYIPDPEDKKPEGYDDIPKEITDPEAKKPEDW 257          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.924e-53
Identity = 119/226 (52.65%), Postives = 139/226 (61.50%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            ES+WVKS+WKKDEN AGEWN+T+GKWNGD NDKGIQTSEDYRFYAISAEFPEFSNK K   V  F     +   CGGGYMKLL      ++     P ++     I    + +K    L      +  KKEVPCETDQLTHVYTFILRPDATYSILIDN EKQ             K  +    ++      ++ +          GYDDIP+EITDPDAKKP+DW
Sbjct:   40 ESRWVKSEWKKDENMAGEWNHTSGKWNGDANDKGIQTSEDYRFYAISAEFPEFSNKGKNL-VFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDI-CGYSTKKVHAILTYNDTNHLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPSAKKPEDWD-EKEFIDDPEDKKPEGYDDIPEEITDPDAKKPEDW 262          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.432e-53
Identity = 121/233 (51.93%), Postives = 138/233 (59.23%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAP-------RKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            E +WVKSDWKKD+NTAGEW +TAG W+GD NDKGIQTSEDYRFYAISAEFPEFSNKDKT  V  F     +   CGGGYMKLL     S++   V           S++  P       +K    L   G  +  KKEVPCETDQLTHVYTF+LRPDATYSILIDN EKQ             K  +    ++       + Y          GYDDIPKEI D DAKKP+DW
Sbjct:   35 EKRWVKSDWKKDDNTAGEWKHTAGNWSGDANDKGIQTSEDYRFYAISAEFPEFSNKDKTL-VFQFSVKHEQKLDCGGGYMKLL-----SDD---VDQTKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNHLIKKEVPCETDQLTHVYTFVLRPDATYSILIDNVEKQTGSLYSDWDLLPAKKIKDPSAKKPEDWD-DKEYIPDPEDTKPAGYDDIPKEIPDTDAKKPEDW 257          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.097e-52
Identity = 115/227 (50.66%), Postives = 141/227 (62.11%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVV-IAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            ES+WVKS+WKKDEN AGEWN+T+GKWNGD  DKGIQTSEDYRFYAISAE+PEFSNKDKT  V  F     +   CGGGY+KLL      ++  +    + S + +  +   + +K    L   G+ +  KK+VPC+TDQLTHVYTFI+RPDATYSILIDN EK              K  +    ++       + Y          GYDDIPKEI DPDAKKP+DW
Sbjct:   38 ESRWVKSEWKKDENMAGEWNHTSGKWNGDAEDKGIQTSEDYRFYAISAEYPEFSNKDKTL-VLQFSVKHEQKLDCGGGYVKLL--GGDVDQKTLGGDTSYSIISRPDISRYSTKKVHTILTKDGKNHLIKKDVPCQTDQLTHVYTFIIRPDATYSILIDNEEKHTGSIYEHWDILPPKKIKDPEAKKPEDWD-DKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDW 260          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.213e-51
Identity = 116/226 (51.33%), Postives = 136/226 (60.18%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            E +WVKS+WKKDE+ AGEWNYT+GKWNGD NDKGIQTSEDYRFYAISAEFPEFSNKD T  V  F     +   CGGGYMKLL      ++     P ++     I    + +K           +  KK+VPCETDQLTHVYTFILRPDATYSILIDN EKQ             K  +    ++       + +          GYDDIP EITDP+AKKP+DW
Sbjct:   38 EKRWVKSEWKKDESMAGEWNYTSGKWNGDANDKGIQTSEDYRFYAISAEFPEFSNKDNTL-VFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDI-CGYSTKKVHAIFNYNDTNHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNQEKQTGSLYTDWDLLPAKKIKDPEAKKPEDWD-DKEFIPDPEDKKPEGYDDIPAEITDPEAKKPEDW 260          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 2.069e-51
Identity = 117/226 (51.77%), Postives = 137/226 (60.62%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            E++WVKS+WKKD+NTAGEW +TAG W+GD NDKGIQTSEDYRFYAISAEFPEFSNKDKT  V  F     +   CGGGYMKLL      ++     P ++     I    + +K    L      +  KK+VPCETDQLTHVYTFILRPDATYSILIDN EKQ             K  +    ++      Q  Y          GYDDIPKEI D D+KKP+DW
Sbjct:   35 ENRWVKSEWKKDDNTAGEWKHTAGNWSGDANDKGIQTSEDYRFYAISAEFPEFSNKDKTL-VFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDI-CGYSTKKVHAILTYNEANHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDWDLLPPKKIKDPSAKKPEDWDEQE-YISDPEDKKPDGYDDIPKEIPDTDSKKPEDW 257          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.702e-51
Identity = 113/226 (50.00%), Postives = 137/226 (60.62%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            ES+WVKS+WKKDEN AGEWN+T+GKWNGDP DKGIQTSEDYRFYAISAE+PEFSNKDKT  V  F     +   CGGGY+KLL      ++     P ++     I    + +K         + +  KK+VPCETDQL+HVYT I+ PDATY+ILIDN EKQ             K  +    ++       + Y          GYDDIPKEI DPDAKKP+DW
Sbjct:   42 ESRWVKSEWKKDENMAGEWNHTSGKWNGDPEDKGIQTSEDYRFYAISAEYPEFSNKDKTL-VLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDI-CGYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVEKQSGSIYEHWDILPPKQIKDPEAKKPEDWD-DKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDW 264          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR3_ARATH (Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.490e-33
Identity = 86/226 (38.05%), Postives = 123/226 (54.42%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            +S+WV SDWK++E  AG + +TAGKW GDP++KGIQT  D + YAISA+ PEFSNK++T  V  +     +   CGG Y+KLL      ++     P ++     I      +K    +   GQ    KK++ CETD+L H YTFILRPDA+YS+L+DN E++             +  +    ++       R Y          G+D IP+EI D  AK+P+DW
Sbjct:   41 KSRWVLSDWKRNEGKAGTFKHTAGKWPGDPDNKGIQTYNDAKHYAISAKIPEFSNKNRTL-VVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSLMFGPDICGT-QTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWD-DREYIDDPNDVKPEGFDSIPREIPDRKAKEPEDW 263          
The following BLAST results are available for this feature:
BLAST of CF417160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CALR_RICCO3.644e-5653.98Calreticulin OS=Ricinus communis PE=2 SV=1[more]
CALR_PRUAR1.172e-5453.54Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]
CALR_BERST2.887e-5352.86Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR_NICPL4.924e-5352.65Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR1_ARATH6.432e-5351.93Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR_MAIZE1.097e-5250.66Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR_BETVU1.213e-5151.33Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR2_ARATH2.069e-5151.77Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=... [more]
CALR_ORYSJ2.702e-5150.00Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]
CALR3_ARATH1.490e-3338.05Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-090 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417160 ID=CF417160; Name=CF417160; organism=Citrus sinensis; type=EST; length=679bp
GAAAGCCAGTGGGTTAAATCTGATTGGAAGAAAGATGAGAACACGGCTGG
AGAATGGAACTACACTGCCGGGAAATGGAATGGGGACCCGAATGATAAAG
GTATTCAAACTAGTGAAGACTACAGGTTCTATGCTATTTCAGCTGAATTC
CCTGAATTCAGCAACAAGGACAAGACACNTCGTGTTCCAGTTTTCTGTTA
AGCATGAACAGAAGCTTGGACCTGTGGTGGTGGCTACATGAAGTTGCTTT
AGTGGCGAAGTTGATCAGAAGAAAATTTGGTGGTGATACCCCTTACAGTA
TCATGTTTGGACCAGATATCTGTGGTTATAGCACCAAGAAAGTGCATGCC
ATTCTTACCTACAATGGGACAAACAAATTGATCCAAGAAGGAAGTACCAT
GTGAGACTGACCAACTCACTCATGTTTATACTTTCATCCTCCGTCCAGAT
GCTACTTACAGCATCCTCATTGACAATGCGGAGAAACAATCTGGTAGCTT
GTACTCCTGATTGGGATCTCCTCCCTCCAAAGACCATCAAGGATCCTGAC
GCCAAGAAACCTGAAGACTGGGATGACAAAGAATATATTCCCGATCCTGA
AGACAAGNAAGCCAGAGGGGCTATGATGACATTCCAAAGGAGATAACAGA
TCCTGATGCCAAGAAGCCTGATGATTGGG
back to top