CF417178

Overview
NameCF417178
Unique NameCF417178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417178 vs. ExPASy Swiss-Prot
Match: PCS1_LOTJA (Glutathione gamma-glutamylcysteinyltransferase 1 OS=Lotus japonicus GN=PCS1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 78/220 (35.45%), Postives = 105/220 (47.73%), Query Frame = 3
Query:    6 FKDFIKCVAEFWRQEDAGVFSSXXXXXXXXXXXX------GTELFKHLNRWLASEICSCKSLVSLGFNENSVFPM---------------KPSLLDQTCRKETNLTLAKADGAKPMTLVSGKTRTNGIDQGIDMLLVPSSLPSQSGNLL------------HPSTAGILTLLVLALPQRTWAGIKQEKLLAQFNHLTSIDNLPTPLQLEVLHLRRQLHFL 566
            F++FIK VAE  R ED     S                   T LFKH+  +L S  CS  +  S    +   FP+               K S   + C +ET +   KA+  KP+ +V G       +QG+D+L+     PS  G L             HP++  +LT+L+L+LP  TWAGI  EKLL++ + L SI+NLP  LQ EVLHLRRQLH L
Sbjct:  274 FEEFIKWVAEIRRGEDGSPSLSVEEKARLSVKEEILKQVQRTGLFKHVASFL-SHSCSGHTPTS---GDRDTFPVIAASVCCQGAEILGGKISSSAEYCCRETCMKCWKAEDDKPIRMVCGTVVNGNTEQGVDVLI-----PSSCGKLSCTCSSTTKSIRKHPASTDVLTVLLLSLPTSTWAGIADEKLLSEIHDLVSIENLPALLQEEVLHLRRQLHIL 484          
BLAST of CF417178 vs. ExPASy Swiss-Prot
Match: PCS1_WHEAT (Glutathione gamma-glutamylcysteinyltransferase 1 OS=Triticum aestivum GN=PCS1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.462e-17
Identity = 49/120 (40.83%), Postives = 71/120 (59.17%), Query Frame = 3
Query:  228 DQTCRKETNLTLAKADGAKPMTLVSGKTRTNGIDQGIDMLLVPSSLPSQSGN-------LLHPSTAGILTLLVLALPQRTWAGIKQEKLLAQFNHLTSIDNLPTPLQLEVLHLRRQLHFL 566
            D  C +ET +   +A+G    T++SG   + G +Q +D+LL  SS  +   N       + +PS+  +LT+L+L L   TW GIK E + A+F  L S DNLP  L+ E+LHLRRQLH+L
Sbjct:  366 DGFCCRETCIKCIEANGDGLKTVISGTVVSKGNEQAVDLLLPTSSSKTSLCNSNLKSKIVKYPSSTDVLTVLLLVLQPNTWLGIKDENVKAEFQSLVSTDNLPDLLKQEILHLRRQLHYL 485          
BLAST of CF417178 vs. ExPASy Swiss-Prot
Match: PCS3_LOTJA (Glutathione gamma-glutamylcysteinyltransferase 3 OS=Lotus japonicus GN=PCS3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 64/199 (32.16%), Postives = 95/199 (47.74%), Query Frame = 3
Query:    9 KDFIKCVAEFWRQEDAGVFSSXXXXXXXXXXXX------GTELFKHLNRWLASEICSCKSLVSLGFNENSVFPMKPS--------------LLDQTCRKETNLTLAKADGAKPMTLVSGKTRT-NGIDQGIDMLLVPSSLPSQSGNLL--HPSTAGILTLLVLALPQRTWAGIKQEKLLAQFNHLTSIDNLPTPLQLEV 536
            ++FI  +AE  RQED  +  S                   T LFKH+  WL S+   C+++  L   +  + P   +              L    C  + ++     D    +TLVSG   + +  +QG+D+L VP       G+ +  HPSTA +LT+L+LALP  TW+GIK+EKL A+   L + +NLP  LQ EV
Sbjct:  275 REFITWIAEVRRQEDGNLTLSEEEKGRLAIKADILEQIRTTTLFKHVTSWLDSQRSRCRTIAKL--QDRDMLPELAAGVCCQGACLLTGCCLPGGKCCSQIDVKHLNVDHKNIVTLVSGTVASGSSSEQGVDVL-VPLCQMGPEGHCIGMHPSTADVLTVLLLALPLHTWSGIKEEKLCAEVTSLLTTENLPPLLQEEV 470          
BLAST of CF417178 vs. ExPASy Swiss-Prot
Match: PCS1_ARATH (Glutathione gamma-glutamylcysteinyltransferase 1 OS=Arabidopsis thaliana GN=PCS1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.765e-15
Identity = 62/205 (30.24%), Postives = 97/205 (47.32%), Query Frame = 3
Query:    6 FKDFIKCVAEFWRQED------AGVFSSXXXXXXXXXXXXGTELFKHLNRWLASEICSCKSLVSLGFNENSVFP-----------MKPSLLDQTCRKETNLTLAKADGAKPMTLVSGKTRTNGIDQGIDMLLVPSSLPSQSG-NLLHPSTAGILTLLVLALPQRTWAGIKQEKLLAQFNHLTSIDNLPTPLQLEVLHLRRQLHFL 566
            F  FI+ VAE    ED      A   S              TELFKH+N++L++          +G+ ++  +            +  S   + C +ET +   K       T+V+G    +G +Q +D+L+  +    + G    +P+   + T L+LALP +TW+GIK + L+ +   L S+ +LPT LQ EVLHLRRQL  L
Sbjct:  274 FNQFIRWVAEIRITEDSNQNLSAEEKSRLKLKQLVLKEVHETELFKHINKFLST----------VGYEDSLTYAAAKACCQGAEILSGSPSKEFCCRETCVKCIKGPDDSEGTVVTGVVVRDGNEQKVDLLVPSTQTECECGPEATYPAGNDVFTALLLALPPQTWSGIKDQALMHEMKQLISMASLPTLLQEEVLHLRRQLQLL 468          
BLAST of CF417178 vs. ExPASy Swiss-Prot
Match: PCS2_LOTJA (Glutathione gamma-glutamylcysteinyltransferase 2 OS=Lotus japonicus GN=PCS2 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 67/204 (32.84%), Postives = 96/204 (47.06%), Query Frame = 3
Query:    9 KDFIKCVAEFWRQEDAGVFSSXXXXXXXXXXXXGTE------LFKHLNRWLASEICSCKSLVSLGFNENSVFPMKPSLLDQTC-RKETNLTLAKADGAK-----------------PMTLVSGKTRT-NGIDQGIDMLLVPSSLPSQSGNLL--HPSTAGILTLLVLALPQRTWAGIKQEKLLAQFNHLTSIDNLPTPLQLEVL 539
            ++FI  +AE  RQED  +  S              E      LFKH+  WL S+   C ++ +L   +     M P L  + C +    LT     G K                   T VSG   T +  +QG+D+L VP       G+ +  HPSTA +LT+L+LALP  TW+GIK+EKL A+   L + ++LP+ LQ EV+
Sbjct:  275 REFITWIAEVRRQEDGNLTLSEEEKGRLVIKAEILEKIRTAGLFKHVTSWLDSQRSRCSTIANLQDKD-----MLPELAARVCCQGACLLTGCCLSGGKCCCQIDVKHLNVDSKNLATTFVSGTFTTGSSSEQGVDVL-VPLCQRGPEGHYIAMHPSTADVLTVLLLALPLHTWSGIKEEKLRAEVTSLVTTEDLPSLLQEEVI 472          
The following BLAST results are available for this feature:
BLAST of CF417178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PCS1_LOTJA2.811e-2135.45Glutathione gamma-glutamylcysteinyltransferase 1 O... [more]
PCS1_WHEAT2.462e-1740.83Glutathione gamma-glutamylcysteinyltransferase 1 O... [more]
PCS3_LOTJA6.065e-1632.16Glutathione gamma-glutamylcysteinyltransferase 3 O... [more]
PCS1_ARATH1.765e-1530.24Glutathione gamma-glutamylcysteinyltransferase 1 O... [more]
PCS2_LOTJA8.758e-1532.84Glutathione gamma-glutamylcysteinyltransferase 2 O... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-108 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_C9 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417178 ID=CF417178; Name=CF417178; organism=Citrus sinensis; type=EST; length=670bp
GTTGATTTAAAGACTTCATCAAGTGTGTTGCAGAGTTCTGGAGACAAGAA
GATGCTGGTGTTTTCTCAAGTAAAATAGAGAAAGAAGAAGTATTGAAAAT
AATTGAAGGAACTGAACTATTCAAGCATCTTAATAGATGGCTGGCTTCTG
AAATCTGCTCATGCAAAAGTCTCGTATCTTTGGGTTTCAATGAAAATTCA
GTATTTCCTATGAAACCGAGTTTGTTAGATCAAACCTGCCGTAAGGAAAC
AAATCTGACACTTGCAAAAGCTGACGGTGCAAAGCCTATGACATTGGTTT
CTGGGAAAACAAGAACAAATGGCATTGATCAAGGTATTGACATGTTGTTG
GTTCCTTCATCTTTACCCAGTCAATCGGGAAATTTGCTGCATCCTTCAAC
AGCCGGCATTCTGACACTACTTGTATTGGCACTGCCTCAACGTACATGGG
CCGGAATTAAACAAGAAAAGCTACTTGCTCAATTTAATCATCTTACATCA
ATTGACAATCTCCCTACTCCGCTTCAACTGGAGGTCTTGCATTTGAGACG
ACAGCTTCATTTTCTCACGATCGATCTCCGTGGACCGTCACTCTCTGGTT
AATTANTCACTTAGTAAGGGCTTATTGTAACAATTAAATTTTTATCCCGA
ATTTTATTCAATATATAATA
back to top