CF417205

Overview
NameCF417205
Unique NameCF417205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13291 contig Csv1_Contig13291:244..722. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CF417205 vs. ExPASy Swiss-Prot
Match: Y8111_DICDI (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.046e-17
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 QKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 291
            Q+ QE  ++EA+ERRQ +L QIL+ +ARERL+RI +VKPEK+R +ED+I+R+AQ GQ+ E+V + +LISLLE                +R  +EDDD
Sbjct:   24 QQRQEAQRQEANERRQGILIQILTPDARERLSRITIVKPEKSRQIEDLIIRAAQTGQLTERVDDAKLISLLE---QLSEKTKKTTITMKRRTIEDDD 117          
BLAST of CF417205 vs. ExPASy Swiss-Prot
Match: PDCD5_PONAB (Programmed cell death protein 5 OS=Pongo abelii GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 3.380e-12
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    7 AQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 291
            AQ++AK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+               RR+ +  D+D
Sbjct:   28 AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122          
BLAST of CF417205 vs. ExPASy Swiss-Prot
Match: PDCD5_HUMAN (Programmed cell death protein 5 OS=Homo sapiens GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 3.380e-12
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    7 AQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 291
            AQ++AK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+               RR+ +  D+D
Sbjct:   28 AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122          
BLAST of CF417205 vs. ExPASy Swiss-Prot
Match: PDCD5_MOUSE (Programmed cell death protein 5 OS=Mus musculus GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 5.765e-12
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    7 AQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 291
            AQ++AK+   E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE               RR+ +  D+D
Sbjct:   28 AQQEAKQREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122          
BLAST of CF417205 vs. ExPASy Swiss-Prot
Match: PDCD5_BOVIN (Programmed cell death protein 5 OS=Bos taurus GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 1
Query:    7 AQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 291
            AQ++AK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE               RR+ +  D+D
Sbjct:   28 AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122          
BLAST of CF417205 vs. ExPASy Swiss-Prot
Match: YF69_SCHPO (Uncharacterized protein C23C4.09c OS=Schizosaccharomyces pombe GN=SPAC23C4.09c PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.833e-12
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   34 DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 291
            DE RQ +LSQIL   AR+RL RIALV+ ++A  VE+++LR A+ GQI  K+SE  LI LLE                 R V +D+D
Sbjct:   42 DEMRQNLLSQILEHPARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKISGEVSKRNETKIVINRRVQDDED 127          
The following BLAST results are available for this feature:
BLAST of CF417205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y8111_DICDI2.046e-1748.45DNA-binding protein DDB_G0278111 OS=Dictyostelium ... [more]
PDCD5_PONAB3.380e-1238.95Programmed cell death protein 5 OS=Pongo abelii GN... [more]
PDCD5_HUMAN3.380e-1238.95Programmed cell death protein 5 OS=Homo sapiens GN... [more]
PDCD5_MOUSE5.765e-1238.95Programmed cell death protein 5 OS=Mus musculus GN... [more]
PDCD5_BOVIN7.529e-1238.95Programmed cell death protein 5 OS=Bos taurus GN=P... [more]
YF69_SCHPO9.833e-1245.35Uncharacterized protein C23C4.09c OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-135 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417205 ID=CF417205; Name=CF417205; organism=Citrus sinensis; type=EST; length=480bp
CAGAAAGCTCAGGAAGATGCCAAGAGGGAGGCAGATGAACGGAGACAAAT
GATGCTTAGCCAGATTTTGTCAACCGAAGCACGTGAAAGACTTGCTCGAA
TTGCTTTGGTGAAACCCGAGAAGGCTAGAGGTGTTGAGGACATTATATTG
AGATCTGCCCAAATGGGTCAGATAGTTGAGAAGGTTTCTGAAGAGAGGCT
CATATCATTGCTGGAACAGATTAACACCCAAACCACCAAACAGACCAAAG
TCACAATCCAAAGGCGCCGGAGTGTTTTGGAAGATGATGATTAACCTTGT
GTAATTTCTGGTCATCATGGTGTGATACGCAATGCTATTCATGGTTATTG
AAATTATGATGTGCTTTTTCATTGTTATTGACGGTTCACCGTTTTGACAT
TATCTACAGGGGTTTGTGTTATTTATACTCAAATCTTTTCTATAGTTATG
TATCGGTTATTTTACTAGTAATTAACTTCC
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