CF417270 | Citrus Genome Database

Overview


Name	CF417270
Unique Name	CF417270
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	691

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.209e-44
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 2

Query:  215 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L + F +DYPS+P    F
Sbjct:    3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77

HSP 2 Score: 88.1965 bits (217), Expect = 4.209e-44
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1

Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL
Sbjct:   72 PPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

HSP 3 Score: 30.0314 bits (66), Expect = 4.209e-44
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3

Query:  606 YQLFIQDPAEYKRRVRQQAKQYPP 677
            Y ++ Q+  EY++RVR QAK++ P
Sbjct:  134 YTIYCQNRVEYEKRVRAQAKKFAP 157

[Close]

BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.209e-44
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 2

Query:  215 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L + F +DYPS+P    F
Sbjct:    3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77

HSP 2 Score: 88.1965 bits (217), Expect = 4.209e-44
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1

Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL
Sbjct:   72 PPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

HSP 3 Score: 30.0314 bits (66), Expect = 4.209e-44
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3

Query:  606 YQLFIQDPAEYKRRVRQQAKQYPP 677
            Y ++ Q+  EY++RVR QAK++ P
Sbjct:  134 YTIYCQNRVEYEKRVRAQAKKFAP 157

[Close]

BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.209e-44
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 2

Query:  215 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L + F +DYPS+P    F
Sbjct:    3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77

HSP 2 Score: 88.1965 bits (217), Expect = 4.209e-44
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1

Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL
Sbjct:   72 PPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

HSP 3 Score: 30.0314 bits (66), Expect = 4.209e-44
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3

Query:  606 YQLFIQDPAEYKRRVRQQAKQYPP 677
            Y ++ Q+  EY++RVR QAK++ P
Sbjct:  134 YTIYCQNRVEYEKRVRAQAKKFAP 157

[Close]

BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.209e-44
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 2

Query:  215 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L + F +DYPS+P    F
Sbjct:    3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77

HSP 2 Score: 88.1965 bits (217), Expect = 4.209e-44
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1

Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL
Sbjct:   72 PPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

HSP 3 Score: 30.0314 bits (66), Expect = 4.209e-44
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3

Query:  606 YQLFIQDPAEYKRRVRQQAKQYPP 677
            Y ++ Q+  EY++RVR QAK++ P
Sbjct:  134 YTIYCQNRVEYEKRVRAQAKKFAP 157

[Close]

BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.209e-44
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 2

Query:  215 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L + F +DYPS+P    F
Sbjct:    3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77

HSP 2 Score: 88.1965 bits (217), Expect = 4.209e-44
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1

Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL
Sbjct:   72 PPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

HSP 3 Score: 30.0314 bits (66), Expect = 4.209e-44
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3

Query:  606 YQLFIQDPAEYKRRVRQQAKQYPP 677
            Y ++ Q+  EY++RVR QAK++ P
Sbjct:  134 YTIYCQNRVEYEKRVRAQAKKFAP 157

[Close]

BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.209e-44
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 2

Query:  215 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L + F +DYPS+P    F
Sbjct:    3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77

HSP 2 Score: 88.1965 bits (217), Expect = 4.209e-44
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1

Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL
Sbjct:   72 PPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

HSP 3 Score: 30.0314 bits (66), Expect = 4.209e-44
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3

Query:  606 YQLFIQDPAEYKRRVRQQAKQYPP 677
            Y ++ Q+  EY++RVR QAK++ P
Sbjct:  134 YTIYCQNRVEYEKRVRAQAKKFAP 157

[Close]

BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.209e-44
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 2

Query:  215 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L + F +DYPS+P    F
Sbjct:    3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77

HSP 2 Score: 88.1965 bits (217), Expect = 4.209e-44
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1

Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL
Sbjct:   72 PPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

HSP 3 Score: 30.0314 bits (66), Expect = 4.209e-44
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3

Query:  606 YQLFIQDPAEYKRRVRQQAKQYPP 677
            Y ++ Q+  EY++RVR QAK++ P
Sbjct:  134 YTIYCQNRVEYEKRVRAQAKKFAP 157

[Close]

BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.209e-44
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 2

Query:  215 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L + F +DYPS+P    F
Sbjct:    3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77

HSP 2 Score: 88.1965 bits (217), Expect = 4.209e-44
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1

Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL
Sbjct:   72 PPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

HSP 3 Score: 30.0314 bits (66), Expect = 4.209e-44
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3

Query:  606 YQLFIQDPAEYKRRVRQQAKQYPP 677
            Y ++ Q+  EY++RVR QAK++ P
Sbjct:  134 YTIYCQNRVEYEKRVRAQAKKFSP 157

[Close]

BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.209e-44
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 2

Query:  215 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L + F +DYPS+P    F
Sbjct:    3 GIALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77

HSP 2 Score: 88.1965 bits (217), Expect = 4.209e-44
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1

Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL
Sbjct:   72 PPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

HSP 3 Score: 30.0314 bits (66), Expect = 4.209e-44
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3

Query:  606 YQLFIQDPAEYKRRVRQQAKQYPP 677
            Y ++ Q+  EY++RVR QAK++ P
Sbjct:  134 YTIYCQNRVEYEKRVRAQAKKFSP 157

[Close]

BLAST of CF417270 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.281e-42
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 2

Query:  215 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSNPQSVSF 436
            GIA  RL +ERKAWRK+HP G VA P +  DG++NLM  EC IPGK GT WEGG F L + F +DYPS+P    F
Sbjct:    3 GIALSRLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77

HSP 2 Score: 88.1965 bits (217), Expect = 1.281e-42
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1

Query:  418 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 564
            PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL
Sbjct:   72 PPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

HSP 3 Score: 33.113 bits (74), Expect = 1.281e-42
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = 3

Query:  606 YQLFIQDPAEYKRRVRQQAKQYPP 677
            Y +F QD  EY++RVR QAK++ P
Sbjct:  134 YTIFCQDRTEYEKRVRAQAKKFSP 157

The following BLAST results are available for this feature:

BLAST of CF417270 vs. ExPASy Swiss-Prot

BLAST of CF417270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29


Match Name	E-value	Identity	Description
UBC9_XENTR	4.209e-44	61.33	SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis...	[more]
UBC9_XENLA	4.209e-44	61.33	SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=...	[more]
UBC9_SPETR	4.209e-44	61.33	SUMO-conjugating enzyme UBC9 OS=Spermophilus tride...	[more]
UBC9_RAT	4.209e-44	61.33	SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ...	[more]
UBC9_MOUSE	4.209e-44	61.33	SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub...	[more]
UBC9_HUMAN	4.209e-44	61.33	SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB...	[more]
UBC9_CHICK	4.209e-44	61.33	SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U...	[more]
UBC9B_DANRE	4.209e-44	61.33	SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u...	[more]
UBC9A_DANRE	4.209e-44	61.33	SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u...	[more]
UBC9_PAGMA	1.281e-42	58.67	SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-200 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_D04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417270 ID=CF417270; Name=CF417270; organism=Citrus sinensis; type=EST; length=691bp
GAAATATAGAAGCATGGAAGTTGCGTAAGCTTCAATCTTCCGTTTAAGAA
TATCAGAAGTCAACATCCCGGGCAGCAAGCACGTACACGGTACTCGGTAC
TCGGTACTCGGTACTCGGTACTCATAAGCTTGTTTCTTCTGCAAACAAAC
ATTGATTAATACAGTTAGTTATACAAGCGATCATAATTCAAACGTAAGAG
TCATCATGTCGGGTGGTATTGCTCGCGGCCGTCTCACAGAGGAGCGAAAA
GCCTGGCGCAAGAATCATCCCCACGGTTTTGTGGCCAAGCCTGAAACCAA
AGATGGTTCCGTGAATTTGATGATCTGGGAGTGTATCATTCCTGGCAAGA
CTGGGACTGATTGGGAAGGTGGCTACTTTCCTCTTACTCTCTACTTCAGC
GAAGACTATCCCAGCAACCCCCAAAGTGTAAGTTTCCTCAAGGTTTCTTT
CATCCTAATGTCTACCCTTCTGGAACAGTATGCCTGTCAATCCTCAATGA
GGACAATGGGTGGAGACCTGCCATTACTGTGAAGCAAATTTTAGTGGGCA
TTCAGGATTTGCTGGGATCAACCCAATCCTGCTGATCCAGCACAAACTGA
TGGGATACCAGCTTTTCATCCAGGATCCTGCCGAGTACAAGAGAAGGGTG
CGACAGCAGGCCAAGCAATATCCCCCCTGTTATATAATGCA