CF417294

Overview
NameCF417294
Unique NameCF417294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4017 contig Csv1_Contig4017:319..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417294 vs. ExPASy Swiss-Prot
Match: DR102_ARATH (DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 4.056e-79
Identity = 139/203 (68.47%), Postives = 166/203 (81.77%), Query Frame = 1 
Query:    1 GVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDS-----DSSGSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY 594
            GVGVA+FANK PGV+A TCL+  DA+N RSI+NCNVLA SG+ TS E+A+EI D W+KTPFK+PCPASG +PW   +S F D S++EM  IGK+   DS     D + ++C ICCL KNRE  PV+++PGGSMKI+RE+PTSAIVRFKAGSVEPAHHHTFGHDLVV++GKKSVWNL+K ER DL  GDYLFTPAGDVHRVKY+
Sbjct:   76 GVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSPETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDETTASCVICCLAKNREFTPVDIMPGGSMKIVRETPTSAIVRFKAGSVEPAHHHTFGHDLVVIKGKKSVWNLSKKERADLVDGDYLFTPAGDVHRVKYH 278
The following BLAST results are available for this feature:
BLAST of CF417294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DR102_ARATH4.056e-7968.47DNA-damage-repair/toleration protein DRT102 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-224 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417294 ID=CF417294; Name=CF417294; organism=Citrus sinensis; type=EST; length=596bp
GGAGTCGGCGTCGCAATCTTCGCCAACAAAAACCCCGGCGTCTTCGCCAC
GACGTGTCTCACTCCCGCCGACGCCCTCAACACCCGCTCCATCAACAACT
GCAACGTCCTCGCTGTCTCAGGTATGTCCACTTCCAAAGAATCCGCCGTC
GAAATCCTCGACACGTGGCTTAAAACCCCTTTTAAGGCCCCATGCCCCGC
GTCGGGTTTGAAGCCATGGGATGAGAAATTGTCGTGTTTTTTCGACAAGT
CGATGACCGAAATGCCCCTTATTGGTAAAAATGATAAATTAGATAGTGAT
TCTAGTGGCAGCACTTGTAGCATATGTTGTTTAGTGAAGAACAGGGAATT
GAATCCTGTGGAAATGATTCCCGGTGGGTCGATGAAGATTATTAGGGAGA
GTCCGACATCGGCCATTGTGAGGTTTAAGGCGGGGAGTGTGGAGCCCGCG
CATCACCATACATTTGGGCATGATCTGGTGGTGCTGGAAGGGAAGAAGAG
TGTGTGGAATCTGACCAAAGGGGAAAGGTTCGATTTGACTGTTGGGGATT
ACTTGTTTACGCCGGCTGGTGATGTGCATAGAGTGAAGTATTACGA
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