CF417306

Overview
NameCF417306
Unique NameCF417306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:536..1050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.350e-59
Identity = 108/114 (94.74%), Postives = 111/114 (97.37%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWAYA NFVPGK
Sbjct:   93 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.350e-59
Identity = 108/114 (94.74%), Postives = 111/114 (97.37%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWAYA NFVPGK
Sbjct:  142 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.273e-58
Identity = 108/114 (94.74%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWA+A NFVPGK
Sbjct:  154 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.273e-58
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGP+ENLADHLADPVNNNAWAYA NFVPGK
Sbjct:  161 VHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.273e-58
Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPL+NL DHLADPVNNNAWAYA NFVPGK
Sbjct:  154 VHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.273e-58
Identity = 107/114 (93.86%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAW+YA NFVPGK
Sbjct:  154 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.663e-58
Identity = 107/114 (93.86%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWAYA NFVPGK
Sbjct:  154 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.172e-58
Identity = 107/114 (93.86%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWA+A NFVPGK
Sbjct:  153 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.172e-58
Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAWAYA NFVPGK
Sbjct:  152 VHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CF417306 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 2.836e-58
Identity = 107/114 (93.86%), Postives = 110/114 (96.49%), Query Frame = -1 
Query:  174 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGXFVQAIVXGKGPLENLADHLADPVNNNAWAYAXNFVPGK 515
            +HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIV GKGPLENLADHLADPVNNNAW+YA NFVPGK
Sbjct:    3 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
The following BLAST results are available for this feature:
BLAST of CF417306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_CUCSA3.350e-5994.74Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA3.350e-5994.74Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2G_SOLLC1.273e-5894.74Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_PINSY1.273e-5892.98Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB27_TOBAC1.273e-5892.98Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_PETSP1.273e-5893.86Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB24_TOBAC1.663e-5893.86Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP2.172e-5893.86Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_TOBAC2.172e-5892.98Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2D_SOLLC2.836e-5893.86Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-236 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417306 ID=CF417306; Name=CF417306; organism=Citrus sinensis; type=EST; length=515bp
TTTTTTTTGGTTTTTTTTTTTTTTTTTTTTGAATGAAAATACAATCCCCT
CAAACTGGTAGTAGCAGTACATTACATAATTCACATGTTTTGCAAGTTGA
AATANAGTCACATCAATAACCAATCACTCTCAATTCCAATTTCCACGCTA
CTAATGNTATCAACCGAAGCTCACTTTCCGGGGACAAAGTTGGNGGCGTA
GGCCCAGGCATTGTTGTTGACAGGGTCGGCCAAGTGGTCGGCCAAGTTCT
CTAACGGNCCCTTGCCGGNGACAATGGCCTGAACGAANAAACCAAACATG
GAGAACATAGCCAACCTTCCATTCTTGATTTCCTTAACCTTGAGCTCAGC
AAAAGCCTCCGGGTCATCAGCCAAACCCAATGGATCAAAGCTGCCACCTG
GGTACAATGGGTCAGTCACTTCACCGAGCGGCCCTCCAGCAATTCTGTAA
CCCTCAACGGCTCCCATCAAGACCACCTGGCAAGCCCAGATGGCCAAGAT
GCTCTGGGCGTGGAT
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