CF417310

Overview
NameCF417310
Unique NameCF417310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_DROME (60S acidic ribosomal protein P2 OS=Drosophila melanogaster GN=RpLP2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.123e-22
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            MRYVAAYLLAVLGG  +P+++D+EKILSSVG+E DAE+L KVI EL GK++++LI  GREKLSSMPVGG
Sbjct:    1 MRYVAAYLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKLSSMPVGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_BRAFL (60S acidic ribosomal protein P2 OS=Branchiostoma floridae PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.141e-21
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            MRYVAAYLLAVLGGNA PS+ D++KIL SVGI+A+ E+L KVI ELKGK++EE++A+GR KLSSMP GG
Sbjct:    1 MRYVAAYLLAVLGGNANPSAGDIKKILGSVGIDAEDERLNKVIGELKGKDIEEVMAAGRGKLSSMPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_ARTSA (60S acidic ribosomal protein P2 OS=Artemia salina PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.671e-20
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            MRYVAAYLLA L GNA PS+AD+EKILSSVGIE +  +L+KV++ELKGK++E LIA G+ KL+SMP GG
Sbjct:    1 MRYVAAYLLAALSGNADPSTADIEKILSSVGIECNPSQLQKVMNELKGKDLEALIAEGQTKLASMPTGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_RAT (60S acidic ribosomal protein P2 OS=Rattus norvegicus GN=Rplp2 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            MRYVA+YLLA LGGN+ PS+ D++KIL SVGIEAD E+L KVISEL GKN+E++IA G  KL+S+P GG
Sbjct:    1 MRYVASYLLAALGGNSNPSAKDIKKILDSVGIEADDERLNKVISELNGKNIEDVIAQGVGKLASVPAGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_MOUSE (60S acidic ribosomal protein P2 OS=Mus musculus GN=Rplp2 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 46/69 (66.67%), Postives = 59/69 (85.51%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            MRYVA+YLLA LGGN++PS+ D++KIL SVGIEAD ++L KVISEL GKN+E++IA G  KL+S+P GG
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKLASVPAGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_HUMAN (60S acidic ribosomal protein P2 OS=Homo sapiens GN=RPLP2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 46/69 (66.67%), Postives = 59/69 (85.51%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            MRYVA+YLLA LGGN++PS+ D++KIL SVGIEAD ++L KVISEL GKN+E++IA G  KL+S+P GG
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_BOVIN (60S acidic ribosomal protein P2 OS=Bos taurus GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 46/69 (66.67%), Postives = 59/69 (85.51%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            MRYVA+YLLA LGGN++PS+ D++KIL SVGIEAD ++L KVISEL GKN+E++IA G  KL+S+P GG
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIGKLASVPAGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_HORSE (60S acidic ribosomal protein P2 OS=Equus caballus GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.179e-20
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            MRYVA+YLLA LGGN +PS+ D++KIL SVGIEAD ++L KVISEL GKN+E++IA G  KL+S+P GG
Sbjct:    1 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLDKVISELNGKNIEDVIAQGIGKLASVPAGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_PIG (60S acidic ribosomal protein P2 OS=Sus scrofa GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.108e-19
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            MRYVA+YLLA LGGN +PS+ D++K L SVGIEAD ++L KVISEL GKN+E++IA G  KL+S+P GG
Sbjct:    1 MRYVASYLLAALGGNTSPSAKDIKKXLDSVGIEADXDRLNKVISELNGKNIEDVIAQGIGKLASVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_CRYST (60S acidic ribosomal protein P2 OS=Cryptochiton stelleri PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.302e-19
Identity = 44/69 (63.77%), Postives = 58/69 (84.06%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            MRYVAAY+LA LGGN  PS +D++KIL SVGIE + ++L KVI+ELKGKN++E+IA G +KL+S+P GG
Sbjct:    1 MRYVAAYMLATLGGNEKPSESDLKKILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEKKLASVPSGG 69          
The following BLAST results are available for this feature:
BLAST of CF417310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RLA2_DROME5.123e-2272.4660S acidic ribosomal protein P2 OS=Drosophila mela... [more]
RLA2_BRAFL1.141e-2172.4660S acidic ribosomal protein P2 OS=Branchiostoma f... [more]
RLA2_ARTSA3.671e-2069.5760S acidic ribosomal protein P2 OS=Artemia salina ... [more]
RLA2_RAT4.795e-2068.1260S acidic ribosomal protein P2 OS=Rattus norvegic... [more]
RLA2_MOUSE4.795e-2066.6760S acidic ribosomal protein P2 OS=Mus musculus GN... [more]
RLA2_HUMAN4.795e-2066.6760S acidic ribosomal protein P2 OS=Homo sapiens GN... [more]
RLA2_BOVIN6.263e-2066.6760S acidic ribosomal protein P2 OS=Bos taurus GN=R... [more]
RLA2_HORSE8.179e-2066.6760S acidic ribosomal protein P2 OS=Equus caballus ... [more]
RLA2_PIG3.108e-1965.2260S acidic ribosomal protein P2 OS=Sus scrofa GN=R... [more]
RLA2_CRYST5.302e-1963.7760S acidic ribosomal protein P2 OS=Cryptochiton st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-240 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417310 ID=CF417310; Name=CF417310; organism=Citrus sinensis; type=EST; length=450bp
TAAAAAAATGCGTTACGTGGCCGCGTACCTGTTAGCCGTCCTCGGAGGCA
ATGCCGCTCCTTCCTCAGCTGATGTTGAGAAGATCTTGAGCTCAGTAGGT
ATTGAGGCTGATGCTGAGAAGCTAAAGAAAGTCATCTCTGAGCTCAAGGG
CAAGAATGTTGAGGAATTGATTGCTTCAGGCCGTGAGAAGCTCTCCTCCA
TGCCAGTTGGTGGTGGTGCCCCTGCTGCTGCAGCTGGAGCACCGGCCGCT
GCTGCCGCTGAAGAAAAGAAGGAAGACAAAAAGGAGGCCAAGAAAGAAGA
ATCTGAATCAGAAGATGAGGATATGGGCTTCGGTCTCTTCGATTAAGTTA
CTTTATGAAGTGGATGTCTCGCGGGTCGTGTCGTCTATTGCATTTTGTAC
TGTAAGGATAATTTAGCAAGTATGTTTCTATGAAATATATTTGTTTTAAT
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