CF417322

Overview
NameCF417322
Unique NameCF417322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig448 contig Csv1_Contig448:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417322 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.815e-71
Identity = 139/191 (72.77%), Postives = 148/191 (77.49%), Query Frame = 3
Query:  141 ESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGXPHQRNRPLVLVNVIFFFGAALNPGTG 713
            + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL  AVIPPGK  +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG P     PL+L N+ FFF AA+NPGTG
Sbjct:   77 KEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTG 267          

HSP 2 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  447 VIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGXPHQRNRPLVLVNVIF 680
            V PP +  +   G+       GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETG P     PL+L  ++F
Sbjct:   73 VAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILF 150          
BLAST of CF417322 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.923e-70
Identity = 137/189 (72.49%), Postives = 147/189 (77.78%), Query Frame = 3
Query:  147 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGXPHQRNRPLVLVNVIFFFGAALNPGTG 713
            K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGAL DRGKF+D+P  PTGL  AVIPPGKG +SALGL EGGP+F FTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG P     PL+L N++FFF AA+NPGTG
Sbjct:   77 KEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTG 265          
BLAST of CF417322 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.429e-70
Identity = 142/189 (75.13%), Postives = 149/189 (78.84%), Query Frame = 3
Query:  147 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGXPHQRNRPLVLVNVIFFFGAALNPGTG 713
            K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL  AVIPPGK +RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETG P Q   PLVL+NV FFF AA+NPG G
Sbjct:   69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNG 255          
BLAST of CF417322 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.871e-69
Identity = 136/191 (71.20%), Postives = 147/191 (76.96%), Query Frame = 3
Query:  141 ESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGXPHQRNRPLVLVNVIFFFGAALNPGTG 713
            + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRG+F+D+P   TGL  AVIPPGK  +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG P     PL+L N+ FFF AA+NPGTG
Sbjct:   77 KEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTG 267          

HSP 2 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  447 VIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGXPHQRNRPLVLVNVIF 680
            V PP +  +   G+       GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETG P     PL+L  ++F
Sbjct:   73 VAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILF 150          
BLAST of CF417322 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.443e-69
Identity = 141/189 (74.60%), Postives = 149/189 (78.84%), Query Frame = 3
Query:  147 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGXPHQRNRPLVLVNVIFFFGAALNPGTG 713
            K KVED            K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP           GAIGALGDRG+FVDEP   TGL  AVIPPGK +RSALGLK  GP+FGFTKSNELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG P     PLVL+NV+FFF AA+NPGTG
Sbjct:   78 KLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEPT--TGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTG 264          
The following BLAST results are available for this feature:
BLAST of CF417322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SOLLC5.815e-7172.77Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_TOBAC4.923e-7072.49Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_ARATH6.429e-7075.13Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
PSBS_SOLSG1.871e-6971.20Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SPIOL2.443e-6974.60Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-252 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417322 ID=CF417322; Name=CF417322; organism=Citrus sinensis; type=EST; length=723bp
AGCCATTCTCTCATCTTATGTTCAACCCACTCTCTAATGAATCTTTAACT
GCTGCTGCGGCTTCTTCATCATCTAAAGCTTTTTCTACTGTTGCCCTCTT
CAAATCTAAAACCAAAGCTCCACCCAAGACCAAGAAGGTTGAATCAAAGC
CAAAAGTTGAGGATGGTATCTTTGGGACCTCTGGAGGATTTGGTTTTACA
AAGCAAAATGAGCTCTTTGTTGGTCGTGTTGCCATGATTGGCTTTGCTGC
TTCCTTGTTGGGTGAGGGAATAACTGGGAAGGGGATTCTAGCTCAGTTGA
ATTTGGAGACCGGAATTCCAATCTATGAAGCAGAGCCACTGCTTTTATTT
TTCATCCTGTTCACCTTGCTTGGAGCAATTGGAGCTTTGGGTGACCGTGG
TAAGTTCGTTGATGAGCCAGATGAGCCCACTGGGCTCGGAGGAGCTGTCA
TTCCTCCAGGCAAAGGCTTGAGATCAGCATTGGGTCTCAAGGAAGGAGGT
CCCATATTTGGATTCACGAAGTCAAACGAGCTGTTTGTGGGAAGATTGGC
TCAGTTGGGTATTGCATTCTCTTTGATTGGAGAAATCATAACAGGGAAAG
GAGCTCTAGCACAACTCAACATTGAGACTGGGNATCCCCATCAACGAAAT
CGACCCCTTGTGCTGGTCAACGTTATCTTCTTCTTTGGTGCCGCATTGAA
TCCTGGAACTGGTAATTTGTCAC
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