CF417337

Overview
NameCF417337
Unique NameCF417337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig449 contig Csv1_Contig449:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417337 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.271e-16
Identity = 74/177 (41.81%), Postives = 96/177 (54.24%), Query Frame = 1 
Query:   22 FKGTIGNQAVPD-VGTMKDFCPPLNFSQFQDLNLYGG--DQI-DHLQQNMDRQSSLDH--GFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATAPCIGPQDDPFKGDQIQIAPP-SNDLDSISDIYETKPVLSGDXXXXXXXXXXXXXXXXRPSPRRTPISTERMNP 531
            +KG +G+ ++   VG       PL+F  FQDLN+YG   DQ+ DH   N   Q+  +H  G   ++ NI LGKKRP+P N G+   K  LMWSD  +  DL+    I   DD  +  QIQ+A   S DLDS+S+IYE K  LSGD                RPSPRR+P+S   MNP
Sbjct:  188 YKGNLGSSSLSAAVGPPPH---PLSFPPFQDLNIYGNTTDQVLDH--HNFHHQNIENHFTGNNAADTNIYLGKKRPNP-NFGNDVRKGLLMWSD--QDHDLSANQSI---DDEHR-IQIQMATHVSTDLDSLSEIYERKSGLSGD------EGNNGGKLLERPSPRRSPLS-PMMNP 345

HSP 2 Score: 25.0238 bits (53), Expect = 1.271e-16
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2 
Query:  548 GGMQQGRNSPYG 583
            GG+ QGRNSP+G
Sbjct:  347 GGLIQGRNSPFG 358
The following BLAST results are available for this feature:
BLAST of CF417337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APL_ARATH1.271e-1641.81Myb family transcription factor APL OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-267 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417337 ID=CF417337; Name=CF417337; organism=Citrus sinensis; type=EST; length=715bp
GAAACCGTGACACCGGCAAGTTTTAAGGGCACTATTGGAAATCAGGCAGT
TCCCGACGTGGGAACCATGAAAGATTTTTGTCCTCCTCTTAATTTTTCAC
AATTTCAAGACCTTAATCTATATGGAGGTGACCAAATTGATCATCTCCAA
CAAAATATGGACAGGCAATCATCACTAGATCATGGATTCATGCAGAGTAA
TGATAATATTTGCCTCGGGAAGAAGAGGCCTAGTCCTTATAATGGGGGTA
GTGGCACTGGCAAGAGCCCTTTGATGTGGTCTGATGATCTGAGGTTACAA
GATTTGGCCACGGCGCCGTGCATTGGACCTCAAGATGATCCTTTCAAGGG
TGACCAGATTCAGATTGCACCGCCATCAAATGATTTGGATTCAATCTCAG
ATATTTATGAAACAAAGCCGGTGCTCTCTGGAGATGCCGTGAGTAGTGAG
AAGAAATTTGAAGCATCATCAGCGAAGCTTGAAAGGCCATCGCCGCGAAG
AACACCAATTTCAACGGAGCGGATGAACCCAGCTATGATGGAATACTGGT
GGCATGCAACAAGGAAGAAATTCACCATACGGGGTGAATTAATGTTCTTC
TAACGTAGATATTATTTTTAAGGGACCTAATATAAATTNAATTATTTAAG
TTCCCNAGTATGAGAGAATTAGGGTTTTAATTAGGTCTTGAAGATTAGCA
ATTTAATTACTTTTA
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