CF417350

Overview
NameCF417350
Unique NameCF417350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length175
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF417350 vs. ExPASy Swiss-Prot
Match: RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.562e-13
Identity = 35/40 (87.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   52 MPPKFDPSQVVDVYVRVTGGEVGPXXSLAPKIGPLGTLPK 171
            MPPKFDPSQVVDVYVRVTGGEVG   SLAPKIGPLG  PK
Sbjct:    1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPK 40
[Close]
BLAST of CF417350 vs. ExPASy Swiss-Prot
Match: RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   52 MPPKFDPSQVVDVYVRVTGGEVGPXXSLAPKIGPLGTLPK 171
            MPPK DPSQ+VDVYVRVTGGEVG   SLAPKIGPLG  PK
Sbjct:    1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPK 40
[Close]
BLAST of CF417350 vs. ExPASy Swiss-Prot
Match: RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   52 MPPKFDPSQVVDVYVRVTGGEVGPXXSLAPKIGPLGTLPK 171
            MPPK DPSQ+VDVYVRVTGGEVG   SLAPKIGPLG  PK
Sbjct:    1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPK 40
[Close]
BLAST of CF417350 vs. ExPASy Swiss-Prot
Match: RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   52 MPPKFDPSQVVDVYVRVTGGEVGPXXSLAPKIGPLGTLPK 171
            MPPK DPSQ+VDVYVRVTGGEVG   SLAPKIGPLG  PK
Sbjct:    1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPK 40
The following BLAST results are available for this feature:
BLAST of CF417350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RL12_PRUAR3.562e-1387.5060S ribosomal protein L12 OS=Prunus armeniaca GN=R... [more]
RL123_ARATH1.768e-1282.5060S ribosomal protein L12-3 OS=Arabidopsis thalian... [more]
RL122_ARATH1.768e-1282.5060S ribosomal protein L12-2 OS=Arabidopsis thalian... [more]
RL121_ARATH1.768e-1282.5060S ribosomal protein L12-1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-280 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417350 ID=CF417350; Name=CF417350; organism=Citrus sinensis; type=EST; length=175bp
AAGCAAAAAGCACTTCACACACTCTTTGTAGCCGTAACCAGCAGAGCAAT
CATGCCGCCGAAGTTCGACCCGAGCCAAGTGGTGGACGTGTACGTCCGCG
TGACCGGTGGCGAGGTGGGACCCNCCNCTTCCCTCGCCCCAAAGATCGGT
CCCCTGGGTACTCTCCCCAAAGTAA
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