CF417404

Overview
NameCF417404
Unique NameCF417404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417404_ssr415 microsatellite CF417404_ssr415:415..426. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13759 contig Csv1_Contig13759:520..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 3.661e-82
Identity = 147/178 (82.58%), Postives = 154/178 (86.52%), Query Frame = 3
Query:    3 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 536
            +WVSCVRFSP+T QPTIVSASWDRTVKVWNL+NCKLR TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHALCFSPNRYWLCAATE SIKIWDLESKSIVEDLKVDL                    IYCTSLNWS DGSTLFSGYTDGV+RVWGIGRY
Sbjct:  150 DWVSCVRFSPSTPQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEADAAIGGDTTTKKKV--IYCTSLNWSADGSTLFSGYTDGVVRVWGIGRY 325          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 6.244e-82
Identity = 146/178 (82.02%), Postives = 154/178 (86.52%), Query Frame = 3
Query:    3 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 536
            +WVSCVRFSPNTLQPTIVSASWD+TVKVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHALCFSPNRYWLCAATE  IKIWDLESKSIVEDLKVDL                    IYCTSLNWS DGSTLFSGYTDGVIRVWGIGRY
Sbjct:  151 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: GBLP_SOYBN (Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.065e-81
Identity = 147/178 (82.58%), Postives = 153/178 (85.96%), Query Frame = 3
Query:    3 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 536
            +WVSCVRFSP+TLQPTIVSASWDRTVKVWNL+NCKLR TLAGH GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHALCFSP+RYWLCAATEQSIKIWDLESKSIVEDLKVDL                    IYCTSLNWS DGSTLFSGYTDGV RVW IGRY
Sbjct:  150 DWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPSRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEADATSGGGNANKKKV--IYCTSLNWSADGSTLFSGYTDGVARVWAIGRY 325          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.426e-80
Identity = 143/178 (80.34%), Postives = 154/178 (86.52%), Query Frame = 3
Query:    3 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 536
            +WVSCVRFSPNTLQPTIVSAS D+TVKVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHALCF+PNRYWLCAATEQ IKIWDLESK++VEDLKVDL                    IYCTSLNWS DGSTLFSGYTDGVIRVWGIGRY
Sbjct:  151 DWVSCVRFSPNTLQPTIVSASCDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFTPNRYWLCAATEQGIKIWDLESKTVVEDLKVDLKAEAEKSDGSGTAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.700e-79
Identity = 139/178 (78.09%), Postives = 152/178 (85.39%), Query Frame = 3
Query:    3 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 536
            +WVSCVRFSPN LQPTIVS SWDRTVK+WNL+NCKLRATLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESK+IV+DLKVDL                    IYCTSL WS DGSTLFSGYTDG+IRVWGIGR+
Sbjct:  151 DWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKTIVDDLKVDLKQESEMSAEGTASGKNKV--IYCTSLGWSADGSTLFSGYTDGLIRVWGIGRF 326          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: GBLP_TOBAC (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 8.439e-79
Identity = 139/178 (78.09%), Postives = 151/178 (84.83%), Query Frame = 3
Query:    3 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 536
            +WVSCVRFSPN LQPTIVS SWDRTVK+WNL+NCKLR TLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESKSIV+DLKVDL                    IYCTSL+WS DGSTLFSGYTDG+IRVWGI RY
Sbjct:  151 DWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRLTLAGHTGYVNTPAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKSIVDDLKVDLKQESEMSSEGTASGKNKV--IYCTSLSWSADGSTLFSGYTDGLIRVWGIDRY 326          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: GBLP_ORYSJ (Guanine nucleotide-binding protein subunit beta-like protein OS=Oryza sativa subsp. japonica GN=Os01g0686800 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.305e-71
Identity = 127/177 (71.75%), Postives = 141/177 (79.66%), Query Frame = 3
Query:    6 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 536
            WVSCVRFSPNT QPTIVS SWDRTVKVWNL+NCKLR  L GH GYVN VAVSPDGSLCASGGKDGV LLWDLAEGKRLYSLDAG++IH+LCFSPNRYWLCAAT+ SIKIWDLESK IV+DLK ++                    +YCTSLNWS DGSTL++GYTDG IR++ I  +
Sbjct:  167 WVSCVRFSPNTFQPTIVSGSWDRTVKVWNLTNCKLRCNLEGHGGYVNAVAVSPDGSLCASGGKDGVTLLWDLAEGKRLYSLDAGSIIHSLCFSPNRYWLCAATQDSIKIWDLESKHIVQDLKPEIPVSKNQM-------------LYCTSLNWSADGSTLYAGYTDGTIRIYKISGF 330          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 1.950e-67
Identity = 121/176 (68.75%), Postives = 132/176 (75.00%), Query Frame = 3
Query:    3 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 530
            EWVSCVRFSP T  P IVS  WD+ VKVWNL+NCKL+  L GH GYVNTV VSPDGSLCASGGKDG+ +LWDLAEGKRLYSLDAG VIH LCFSPNRYWLCAAT+ SIKIWDLESKSIV+DL+ +                      YC SL WS DGSTL+SGYTDG IRVW +G
Sbjct:  151 EWVSCVRFSPMTTNPIIVSGGWDKMVKVWNLTNCKLKNNLVGHHGYVNTVTVSPDGSLCASGGKDGIAMLWDLAEGKRLYSLDAGDVIHCLCFSPNRYWLCAATQSSIKIWDLESKSIVDDLRPEFNITSKKAQVP-----------YCVSLAWSADGSTLYSGYTDGQIRVWAVG 315          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: GBLP_RAT (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Rattus norvegicus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 232.261 bits (591), Expect = 1.768e-60
Identity = 109/175 (62.29%), Postives = 126/175 (72.00%), Query Frame = 3
Query:    3 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 527
            EWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WS DG TLF+GYTD ++RVW +
Sbjct:  149 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: GBLP_PIG (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Sus scrofa GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 232.261 bits (591), Expect = 1.768e-60
Identity = 109/175 (62.29%), Postives = 126/175 (72.00%), Query Frame = 3
Query:    3 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 527
            EWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WS DG TLF+GYTD ++RVW +
Sbjct:  149 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312          
The following BLAST results are available for this feature:
BLAST of CF417404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
GBLP_MEDSA3.661e-8282.58Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ARATH6.244e-8282.02Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_SOYBN1.065e-8182.58Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_BRANA3.426e-8080.34Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_NICPL1.700e-7978.09Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TOBAC8.439e-7978.09Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ORYSJ1.305e-7171.75Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_CHLRE1.950e-6768.75Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_RAT1.768e-6062.29Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_PIG1.768e-6062.29Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-334 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417404 ID=CF417404; Name=CF417404; organism=Citrus sinensis; type=EST; length=664bp
CTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCCCACT
ATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAA
CTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGATACGTGAACACCG
TCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGATGGT
GTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACTCTACTCGCTCGA
CGCTGGTGCTGTCATTCACGCGCTCTGCTTCAGTCCTAATAGGTATTGGT
TGTGTGCGGCGACTGAGCAGAGTATAAAGATCTGGGATTTGGAGAGCAAG
AGCATTGTCGAGGATCTTAAGGTTGATCTTAAGACCGAGGCCGAGAAATC
TGAGGCCACCACCGCCACCACCACCATAAAAAAGAAGAACATTTACTGCA
CAAGCTTGAACTGGAGTGTTGATGGAAGCACCTTGTTCAGTGGTTATACA
GATGGTGTGATCAGAGTCTGGGGTATTGGCCGTTATTGAAAACTGCTTGA
GTAATTGCAAACTGCTGTTCTTTTTCGATTACAAACTAGTTTCTCGACTT
TGTAGGCAGTTTCAGACCTATTTAAGATTTAAGATTTTGTTCAAAATGTT
TTTAAGGATATTTT
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