CF417406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNP2 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=infC PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15 Identity = 40/94 (42.55%), Postives = 61/94 (64.89%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKA 282 K + DLKE+KM Y I++HDY VR+ +A++FLK GDKVK + +GRE + N+A +L+ R D+ E+ I++ K RN+ +IL P K+ Sbjct: 84 KKKQHNADLKEVKMRYKIEEHDYQVRVNSAQRFLKSGDKVKATITFRGREIQHSNLAQKLLDRMAKDLEEVGEIQQRPKREGRNMMMILAPKKS 177
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNS3 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9311) GN=infC PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15 Identity = 47/113 (41.59%), Postives = 70/113 (61.95%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQVVDE 339 K +++ ++KE+KM Y IDQHDY VR+ A++FLK GDKVK V +GRE + +A L+RR D+ E A +++ K RN+ + L P KA K K KD++VV++ Sbjct: 89 KKKSHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAEVLLRRMAKDLEEPAEVQQPPKREGRNMIMFLTPRKAPLVK-----KDKDEEVVNK 196
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNSC (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9605) GN=infC PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15 Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQV 330 K +++ ++KE+KM Y IDQHDY VR+ A++FLK GDKVK V +GRE + +A L+RR D+ E A I++ K RN+ + L P K K +E + +K V Sbjct: 89 KKKSHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAETLLRRMAKDLEEKAEIQQAPKREGRNMIMFLTPRKTPLVKKEEKEQAANKAV 198
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_MICAN (Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) GN=infC PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15 Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 279 K + D+KE+KM Y ID+HDY+VR+ A++FLK GDKVK + +GRE + N+A EL+ R D+ ++A +++ K RN+ ++L P K Sbjct: 84 KKKQHTADIKEVKMRYKIDEHDYNVRVNQAQRFLKAGDKVKATITFRGREIQHSNLAEELLARMAKDLQDVAEVQQAPKKEGRNMMMMLSPKK 176
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNY3 (Translation initiation factor IF-3 OS=Synechocystis sp. (strain PCC 6803) GN=infC PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14 Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVG-ELAIEENKKFRDRNIFIILVPNK 279 K + D+KE+KM Y ID+HDY VR+ A++FLK GDKVK VN +GRE + ++A EL+ R D+ E I++ K RN+ + L P K Sbjct: 84 KKKQHTADVKEVKMRYKIDEHDYQVRINQAKRFLKAGDKVKATVNFRGREIQHAHLAKELLDRMATDLATEADIQQAPKREGRNMMMFLSPKK 176
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PROMT (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain NATL2A) GN=infC PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14 Identity = 43/114 (37.72%), Postives = 69/114 (60.53%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKA--LSQKAQEPPKKKDKQVVD 336 K +++ ++KE+KM Y IDQHDY VR+ A +FLK GDKVK V +GRE + +A L++R D+ E A ++++ K RN+ + L P K L ++++ KK + +D Sbjct: 89 KKKSHQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDKVKCTVIFRGREIQHTALAETLLKRMAKDLEEKAEVQQSPKREGRNMIMFLTPRKTPLLKKESEITEPKKALRTID 202
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PROM4 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9211) GN=infC PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14 Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQV 330 K +++ ++KE+KM Y IDQHDY VR+ A +FLK GDKVK V +GRE + N+A L+ R D+ E A +++ K RN+ + L P K P K +K+V Sbjct: 89 KKKSHQTEVKEVKMRYKIDQHDYEVRINQATRFLKAGDKVKCTVIFRGREIQHTNLAESLLARMAKDLEEQAEVQQTPKREGRNMIMFLTPRKT-------PLIKNEKEV 191
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_CYAP8 (Translation initiation factor IF-3 OS=Cyanothece sp. (strain PCC 8801) GN=infC PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14 Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 279 K + D+KE+KM Y I + DY+VR+ A++FLK GDKVK V +GRE + N+A EL+ R D+ ELA I++ K RN+ + L P K Sbjct: 84 KKKQHTADVKEVKMRYKIGESDYNVRVNQAKRFLKSGDKVKATVTFRGREIQHANLAQELLERMAKDLEELAEIQQAPKREGRNMMMFLTPKK 176
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3C_CYAME (Translation initiation factor IF-3, chloroplastic OS=Cyanidioschyzon merolae GN=infC PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14 Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 1 Query: 1 KKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKA 282 K N+ LKE++M YN+++HDY VRL A KFLK GDKVKV + LKGRE + +A + +FQ DV LA + + RN+ I VP K+ Sbjct: 81 KAKRKNQSQLKEIQMSYNMEEHDYQVRLSQACKFLKAGDKVKVTLMLKGREMQHLELAQNKMAQFQADVSSLAQLAKPPSQEGRNLSAIFVPKKS 175
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PROM1 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain NATL1A) GN=infC PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14 Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKA-LSQKAQE--PPKK 315 K +++ ++KE+KM Y IDQHDY VR+ A +FLK GDKVK V +GRE + +A L++R D+ E A ++++ K RN+ + L P K L +K E PKK Sbjct: 89 KKKSHQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDKVKCTVIFRGREIQHTALAETLLKRMSKDLEEKAEVQQSPKREGRNMIMFLTPRKTPLLKKESETTEPKK 196 The following BLAST results are available for this feature:
BLAST of CF417406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417406 ID=CF417406; Name=CF417406; organism=Citrus sinensis; type=EST; length=714bpback to top |