CF417406

Overview
NameCF417406
Unique NameCF417406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNP2 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=infC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 40/94 (42.55%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKA 282
            K   +  DLKE+KM Y I++HDY VR+ +A++FLK GDKVK  +  +GRE +  N+A +L+ R   D+ E+  I++  K   RN+ +IL P K+
Sbjct:   84 KKKQHNADLKEVKMRYKIEEHDYQVRVNSAQRFLKSGDKVKATITFRGREIQHSNLAQKLLDRMAKDLEEVGEIQQRPKREGRNMMMILAPKKS 177          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNS3 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9311) GN=infC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 47/113 (41.59%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQVVDE 339
            K  +++ ++KE+KM Y IDQHDY VR+  A++FLK GDKVK  V  +GRE +   +A  L+RR   D+ E A +++  K   RN+ + L P KA   K     K KD++VV++
Sbjct:   89 KKKSHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAEVLLRRMAKDLEEPAEVQQPPKREGRNMIMFLTPRKAPLVK-----KDKDEEVVNK 196          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNSC (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9605) GN=infC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQV 330
            K  +++ ++KE+KM Y IDQHDY VR+  A++FLK GDKVK  V  +GRE +   +A  L+RR   D+ E A I++  K   RN+ + L P K    K +E  +  +K V
Sbjct:   89 KKKSHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAETLLRRMAKDLEEKAEIQQAPKREGRNMIMFLTPRKTPLVKKEEKEQAANKAV 198          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_MICAN (Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) GN=infC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 279
            K   +  D+KE+KM Y ID+HDY+VR+  A++FLK GDKVK  +  +GRE +  N+A EL+ R   D+ ++A +++  K   RN+ ++L P K
Sbjct:   84 KKKQHTADIKEVKMRYKIDEHDYNVRVNQAQRFLKAGDKVKATITFRGREIQHSNLAEELLARMAKDLQDVAEVQQAPKKEGRNMMMMLSPKK 176          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNY3 (Translation initiation factor IF-3 OS=Synechocystis sp. (strain PCC 6803) GN=infC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVG-ELAIEENKKFRDRNIFIILVPNK 279
            K   +  D+KE+KM Y ID+HDY VR+  A++FLK GDKVK  VN +GRE +  ++A EL+ R   D+  E  I++  K   RN+ + L P K
Sbjct:   84 KKKQHTADVKEVKMRYKIDEHDYQVRINQAKRFLKAGDKVKATVNFRGREIQHAHLAKELLDRMATDLATEADIQQAPKREGRNMMMFLSPKK 176          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PROMT (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain NATL2A) GN=infC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 43/114 (37.72%), Postives = 69/114 (60.53%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKA--LSQKAQEPPKKKDKQVVD 336
            K  +++ ++KE+KM Y IDQHDY VR+  A +FLK GDKVK  V  +GRE +   +A  L++R   D+ E A ++++ K   RN+ + L P K   L ++++    KK  + +D
Sbjct:   89 KKKSHQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDKVKCTVIFRGREIQHTALAETLLKRMAKDLEEKAEVQQSPKREGRNMIMFLTPRKTPLLKKESEITEPKKALRTID 202          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PROM4 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9211) GN=infC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQV 330
            K  +++ ++KE+KM Y IDQHDY VR+  A +FLK GDKVK  V  +GRE +  N+A  L+ R   D+ E A +++  K   RN+ + L P K        P  K +K+V
Sbjct:   89 KKKSHQTEVKEVKMRYKIDQHDYEVRINQATRFLKAGDKVKCTVIFRGREIQHTNLAESLLARMAKDLEEQAEVQQTPKREGRNMIMFLTPRKT-------PLIKNEKEV 191          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_CYAP8 (Translation initiation factor IF-3 OS=Cyanothece sp. (strain PCC 8801) GN=infC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 279
            K   +  D+KE+KM Y I + DY+VR+  A++FLK GDKVK  V  +GRE +  N+A EL+ R   D+ ELA I++  K   RN+ + L P K
Sbjct:   84 KKKQHTADVKEVKMRYKIGESDYNVRVNQAKRFLKSGDKVKATVTFRGREIQHANLAQELLERMAKDLEELAEIQQAPKREGRNMMMFLTPKK 176          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3C_CYAME (Translation initiation factor IF-3, chloroplastic OS=Cyanidioschyzon merolae GN=infC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    1 KKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKA 282
            K    N+  LKE++M YN+++HDY VRL  A KFLK GDKVKV + LKGRE +   +A   + +FQ DV  LA + +      RN+  I VP K+
Sbjct:   81 KAKRKNQSQLKEIQMSYNMEEHDYQVRLSQACKFLKAGDKVKVTLMLKGREMQHLELAQNKMAQFQADVSSLAQLAKPPSQEGRNLSAIFVPKKS 175          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PROM1 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain NATL1A) GN=infC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKA-LSQKAQE--PPKK 315
            K  +++ ++KE+KM Y IDQHDY VR+  A +FLK GDKVK  V  +GRE +   +A  L++R   D+ E A ++++ K   RN+ + L P K  L +K  E   PKK
Sbjct:   89 KKKSHQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDKVKCTVIFRGREIQHTALAETLLKRMSKDLEEKAEVQQSPKREGRNMIMFLTPRKTPLLKKESETTEPKK 196          
The following BLAST results are available for this feature:
BLAST of CF417406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
IF3_SYNP21.999e-1542.55Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_SYNS34.453e-1541.59Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_SYNSC5.816e-1540.91Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_MICAN7.596e-1541.94Translation initiation factor IF-3 OS=Microcystis ... [more]
IF3_SYNY31.296e-1444.09Translation initiation factor IF-3 OS=Synechocysti... [more]
IF3_PROMT2.210e-1437.72Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_PROM42.210e-1440.00Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_CYAP82.210e-1444.09Translation initiation factor IF-3 OS=Cyanothece s... [more]
IF3C_CYAME2.887e-1445.26Translation initiation factor IF-3, chloroplastic ... [more]
IF3_PROM13.770e-1441.67Translation initiation factor IF-3 OS=Prochlorococ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-336 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417406 ID=CF417406; Name=CF417406; organism=Citrus sinensis; type=EST; length=714bp
AAGAAAAGTGCAGCCAATCGGATGGATTTGAAGGAACTTAAAATGGGTTA
TAATATTGACCAGCATGATTATTCTGTGCGTCTAAAAGCTGCAAGGAAGT
TTCTGAAAGATGGAGACAAGGTTAAGGTCATAGTGAACCTCAAAGGGCGG
GAAAATGAATTCAGAAATATTGCTATTGAGCTAATACGACGTTTCCAGAA
TGATGTTGGGGAGCTTGCTATTGAGGAGAACAAAAAATTCAGAGATAGGA
ATATATTTATAATTTTAGTTCCAAATAAGGCCCTCTCACAGAAGGCTCAA
GAACCACCGAAGAAGAAAGATAAACAAGTTGTAGATGAAGTCTCAACTGG
TGTCTGAGTGCATTCAGCCATTCCAAGTGGGGTTTTGACAACATAACAAA
TTGGCCGGTAATCCTTATATGTGCCTTTCGACTGGGATGTGTTGAAATTC
GTGTATAGAATTAGTGTGTTACAGCTGTGTGGCATATTTATTAGATATTC
TATAACATAAGCAGCTTTTTCAGATCGAATAGTTGTAACATTTGATAGAT
CCATTACTTCTTTTTTATTTAGACAATCAAGACGTCATACAAGGTTCAGT
AAATGGGCATGTATATGTTTCCCTGTGAGGCTGTTCTGGAAGCAAGAACA
ATTTTTAAAATTTTGTATGCAAGATGACCAGTCATGGTATTTGTTCCGCA
AAAAAAAAAAAAAA
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