CF417414

Overview
NameCF417414
Unique NameCF417414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5830 contig Csv1_Contig5830:12..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417414 vs. ExPASy Swiss-Prot
Match: BPS1_ARATH (Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.262e-73
Identity = 132/198 (66.67%), Postives = 164/198 (82.83%), Query Frame = 3
Query:   60 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILXNLVASLDLPKVKNSAXGKVLMRAMYG 653
            M+RPQDP R FFPFGNPF+ +S K S LS KL+ LL +FE  LA  + KL+PK+K DIL +SWM+ AMESLCETHN IK LIT+LELPVSDW++KW+DVYLDISV LLD+C AFSS LT+++QGHLLLQ  LH L+++SP    +A SSLD+W++HI SKNPR+E+CR+IL +LV +L+LPKVKNSA GKVLMRA+YG
Sbjct:    1 MARPQDPPRGFFPFGNPFKNLSSKNSVLSSKLLPLLNNFETNLASSISKLVPKEKSDILTVSWMKQAMESLCETHNGIKTLITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSPQNLSKAQSSLDSWKQHIVSKNPRIENCRAILSSLVQTLNLPKVKNSAKGKVLMRALYG 198          
BLAST of CF417414 vs. ExPASy Swiss-Prot
Match: U496D_ORYSI (UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 8.503e-54
Identity = 112/202 (55.45%), Postives = 135/202 (66.83%), Query Frame = 3
Query:   60 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS----SPTQFGRACSSLDNWREHISSKNPRVESCRSILXNLVASLDLPKVKNSAXGKVLMRAMYG 653
            MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L+++ QG LLLQ  LH L S     S  Q  RA  SL  W E +  + PR+ SC + L  L  +L L KVKNS  GKVLMRA+YG
Sbjct:    1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCPRLVSCSATLQELAGNLSLMKVKNSVKGKVLMRALYG 202          
BLAST of CF417414 vs. ExPASy Swiss-Prot
Match: U496D_ORYSJ (UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.474e-53
Identity = 112/202 (55.45%), Postives = 135/202 (66.83%), Query Frame = 3
Query:   60 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS----SPTQFGRACSSLDNWREHISSKNPRVESCRSILXNLVASLDLPKVKNSAXGKVLMRAMYG 653
            MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L+++ QG LLLQ  LH L S     S  Q  RA  SL  W E +  +  R+ SC + L  L  +L L KVKNSA GKVLMRA+YG
Sbjct:    1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCARLVSCSATLQELAGNLSLMKVKNSAKGKVLMRALYG 202          
The following BLAST results are available for this feature:
BLAST of CF417414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BPS1_ARATH1.262e-7366.67Protein BPS1, chloroplastic OS=Arabidopsis thalian... [more]
U496D_ORYSI8.503e-5455.45UPF0496 protein 4 OS=Oryza sativa subsp. indica GN... [more]
U496D_ORYSJ2.474e-5355.45UPF0496 protein 4 OS=Oryza sativa subsp. japonica ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-344 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417414 ID=CF417414; Name=CF417414; organism=Citrus sinensis; type=EST; length=727bp
CTAACGCGTCTGCGAAATTTCCTAAGATTTTCGAGTACTGATTTCGCAAA
TCCATCAAAATGAGTCGCCCCCAGGATCCACACCGTCCTTTCTTCCCATT
TGGAAATCCTTTTCGGATGATGTCCCCCAAAGGTTCTCGTTTGTCTCCCA
AGCTTGTATCTCTGTTGGCTGATTTTGAGGAGACCTTGGCAGAGAGGCTG
AGAAAACTTATGCCGAAAGACAAGGATGATATCCTCAACTTATCATGGAT
GAGACTGGCAATGGAGTCACTTTGTGAGACTCACAATGTCATAAAAGACC
TTATAACTGAGTTGGAGCTTCCTGTAAGTGACTGGGATGAGAAATGGATA
GACGTGTACTTAGACATCAGTGTAAACTTGCTTGATATATGCATTGCTTT
TAGCTCTGTTCTCACGAAGGTCAGCCAAGGCCACCTATTGCTTCAGTGTG
TCTTGCACACTTTGGATTCTTCCTCTCCAACACAGTTTGGGCGAGCCTGT
TCTTCTCTTGATAACTGGAGGGAGCACATTAGTTCAAAGAACCCCAGAGT
TGAGAGCTGTCGTTCAATCTTANACAATCTGGTAGCTTCTTTGGATTTGC
CCAAGGTTAAGAACTCAGCCNAAGGGAAGGTTTTGATGCGCGCAATGTAT
GGGGGTTAAGGTGTTGACTGTATTTGNTTGGNANTATTTTTGCTGCAGCC
TTCTCTGGATCAGCCAAGAATTTGTTA
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