CF417437

Overview
NameCF417437
Unique NameCF417437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417437 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.458e-39
Identity = 81/154 (52.60%), Postives = 103/154 (66.88%), Query Frame = 2
Query:   77 LEVQLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMH 526
            L +++SGIHWWYK  SHAAELTAG+YN  +RDGY  IA MLK+H  ++NFTC E+R ++Q     +A++ PE LV QVL+A W   + VA ENALP YD   YN IL NA+P     + P    L  FTYLRLS  L +G N++ F+ FV RMH
Sbjct:  290 LAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDLEQSS---QAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of CF417437 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.932e-39
Identity = 81/154 (52.60%), Postives = 102/154 (66.23%), Query Frame = 2
Query:   77 LEVQLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMH 526
            L +++SGIHWWYK  SHAAELTAG+YN  +RDGY  IA MLK+H  ++NFTC E+R  +Q     +A++ PE LV QVL+A W   + VA ENALP YD   YN IL NA+P     + P    L  FTYLRLS  L +G N++ F+ FV RMH
Sbjct:  290 LAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSS---QAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of CF417437 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.173e-37
Identity = 84/177 (47.46%), Postives = 106/177 (59.89%), Query Frame = 2
Query:   44 KLLKRGDTCFG------------LEVQLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMH 526
            KL+K GD                L +++SGIHWWY+  +HAAELTAG+YN  +RDGY  IA ML +H  ++NFTC E+R  +Q E   EA + PE LV QVL+A W   + VA ENAL  YD   YN IL NA+P     N P    L  FTYLRLS  L +G N+  F+ FV++MH
Sbjct:  267 KLIKHGDKILDEANKVFLGCRVQLAIKISGIHWWYRVPNHAAELTAGYYNLDDRDGYRTIARMLTRHHASMNFTCAEMRDSEQSE---EAKSAPEELVQQVLSAGWREGLHVACENALGRYDATAYNTILRNARPKGINKNGPPEHKLFGFTYLRLSNELLEGQNYATFQTFVEKMH 440          
BLAST of CF417437 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 80/154 (51.95%), Postives = 99/154 (64.29%), Query Frame = 2
Query:   77 LEVQLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMH 526
            +  ++SGIHWWY   SHAAELTAGFYN + RDGY PIA ML +H   LNFTC+E+R  +Q     EA + P+ LV QVL++ W   I VA ENALP YD   YN++L N +P    LN P    +S  TYLRLS  L    NF  F++FVK+MH
Sbjct:  295 IAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQP---AEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVKKMH 445          
BLAST of CF417437 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 79/154 (51.30%), Postives = 99/154 (64.29%), Query Frame = 2
Query:   77 LEVQLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMH 526
            L +++SGIHWWYK  +HAAELTAG+YN ++RDGY PIA ML +H   LNFTC+E+R  +Q  D   A + P+ LV QVL+  W   I VA ENALP YD   YN+I+ NAKP     N P    +   TYLRLS  L    NF  F++FV +MH
Sbjct:  293 LAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMH 443          
BLAST of CF417437 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.701e-35
Identity = 84/177 (47.46%), Postives = 103/177 (58.19%), Query Frame = 2
Query:   44 KLLKRGDTCF--------GLEVQL----SGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMH 526
            KL+K GD           G +VQL    SGIHWWY   +HAAELTAG+YN  +RDGY  IA ML +H  ++NFTC E+R  +Q     EA + PE LV QVL+A W   + +A ENAL  YD   YN IL NA+P     N P    L  FTYLR+S  L    N+  F+ FV+RMH
Sbjct:  267 KLIKHGDKILDEANKVFLGCKVQLAIKVSGIHWWYNVPNHAAELTAGYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRDSEQSS---EAKSAPEELVQQVLSAGWREGLNLACENALNRYDATAYNTILRNARPQGINKNGPPEHKLHGFTYLRVSDELFQEQNYTTFKTFVRRMH 440          
BLAST of CF417437 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 75/154 (48.70%), Postives = 99/154 (64.29%), Query Frame = 2
Query:   77 LEVQLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMH 526
            L +++SGIHWWYK  +HAAELTAG+YN  +RDGY PIA M+ +H  +LNFTC+E+R  +Q  D   A + P+ LV QVL+  W  +I VA ENAL  YD   YN+I+ NA+P     + P    +   TYLRLS  L    NF  F++FV +MH
Sbjct:  293 LAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHASLNFTCLEMRDSEQSSD---AQSGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKHRMYGVTYLRLSDELLQQSNFDIFKKFVVKMH 443          
BLAST of CF417437 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 76/158 (48.10%), Postives = 99/158 (62.66%), Query Frame = 2
Query:   77 LEVQLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMHXGSS 538
            L +++SGIHWWYK  +HAAELTAG+YN  +RDGY PIA M+ +H   LNFTC+E+R  +Q  D   A + P+ LV QVL+  W  +I VA ENAL  YD   YN+I+ NA+P     + P    +   TYLRLS  L    NF  F++FV +MH   S
Sbjct:  293 LAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHGILNFTCLEMRDSEQSSD---AQSAPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLLQESNFEIFKKFVVKMHADQS 447          
BLAST of CF417437 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.799e-33
Identity = 74/154 (48.05%), Postives = 98/154 (63.64%), Query Frame = 2
Query:   77 LEVQLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMH 526
            L +++SGIHWWYK  +HAAELTAG+YN  +RDGY PIA ++ +H   LNFTC+E+R  +Q  D   A + P+ LV QVL+  W  +I VA ENAL  YD   YN+I+ NA+P     + P    +   TYLRLS  L    NF  F++FV +MH
Sbjct:  293 LAIKVSGIHWWYKAPNHAAELTAGYYNLDDRDGYRPIAKIVSRHHAILNFTCLEMRDSEQSSD---AHSSPQKLVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLMQQSNFDIFKKFVVKMH 443          
BLAST of CF417437 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.774e-33
Identity = 82/177 (46.33%), Postives = 107/177 (60.45%), Query Frame = 2
Query:   44 KLLKRGDTCFG------------LEVQLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLN-DPDGR---HLSAFTYLRLSPVLTDGHNFIEFERFVKRMH 526
            KL+  GD   G            L  ++SGIHW Y   SHAAELTAG+YN   RDGY PIA ML KH   LNFTC+E++  D   +  EAL+ P+ LV +VL+ AW   I VA ENAL  Y  +GYN+IL NA+P   +P+G+    +  FTYLRLS  +   +NF  F++ V++MH
Sbjct:  272 KLIFHGDQILGEANKIFAGLKVNLAAKVSGIHWLYNHHSHAAELTAGYYNLFKRDGYRPIARMLSKHYGILNFTCLEMKDTD---NTAEALSAPQELVQEVLSKAWKEGIEVAGENALETYGAKGYNQILLNARPNGVNPNGKPKLRMYGFTYLRLSDTVFQENNFELFKKLVRKMH 445          
The following BLAST results are available for this feature:
BLAST of CF417437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AMYB_HORVU4.458e-3952.60Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP9.932e-3952.60Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_WHEAT4.173e-3747.46Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_IPOBA4.614e-3651.95Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_SOYBN7.870e-3651.30Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_MAIZE8.701e-3547.46Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_VIGUN2.532e-3448.70Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_TRIRP1.641e-3348.10Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_MEDSA2.799e-3348.05Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_ARATH4.774e-3346.33Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-367 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417437 ID=CF417437; Name=CF417437; organism=Citrus sinensis; type=EST; length=718bp
GAATTCCAGTGTTATGATAAGTACTTGATGAAGAGTCTGAGCAAAGCTGC
TGAAGCGAGGGGACACTTGTTTTGGGCTAGAGGTCCAGCTATCGGGTATT
CATTGGTGGTATAAAACAGCTAGCCATGCTGCTGAATTGACTGCTGGCTT
CTACAACCCATCGAACCGCGATGGCTATGCTCCAATTGCAGCAATGTTGA
AGAAGCATGGGGTTGCCCTAAACTTCACATGTGTTGAATTGCGCACTGTG
GACCAGCATGAGGACTTTCCAGAGGCATTAGCAGACCCTGAAGGATTGGT
TTGGCAGGTTCTTAATGCTGCATGGGATGTATCCATATTAGTTGCTAGTG
AGAATGCTCTCCCTTGCTATGACAGAGAAGGCTATAACAAGATATTAGAA
AACGCCAAACCCTTAAATGATCCAGATGGGAGGCATTTATCTGCTTTTAC
CTACCTCAGGCTCAGCCCGGTTCTTACGGATGGACACAACTTCATAGAGT
TTGAACGATTTGTAAAGAGAATGCATNGGGGAAGCAGTTCCTGGATCTCC
GGGTTTATACAACTGAAGGAAATAAAGAAGAATGCTCCAAAAATCAGTGA
GTANACAACCAGGTTGCTGCTGAGTAAATATCCCGTTGCACGCCAGATAC
TGGTTAGCTTGGTTTCTCTCTGGNAGTCATTCTGTTCACAAACTTAAAAT
ATACTTCGATCTTGTATA
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