CF417530

Overview
NameCF417530
Unique NameCF417530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6928 contig Csv1_Contig6928:814..1473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 7.544e-88
Identity = 147/219 (67.12%), Postives = 179/219 (81.74%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXXXXXXXXXXXXAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESXVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEV 659
            VFGGVDP HY+G+HTYVPVT+KGYWQF+MGDVLIDGE TG+C  GC+AIADSGTSLLAGPT +IT INHAIGA GV+SQ+CK +V QYG+TI+++L++E  P+KICSQ+ LCTFDGTRG SMGIE                  MCS CEM V+WMQN+LR+N+T ++I+NY+N+LCDR+PSP G+S VDC  LSSMP VSFTIGGK+FDLAP EY+L+V
Sbjct:  244 VFGGVDPKHYRGKHTYVPVTQKGYWQFDMGDVLIDGEPTGFCDGGCSAIADSGTSLLAGPTPVITMINHAIGAKGVVSQQCKAVVAQYGQTIMDLLLSEADPKKICSQINLCTFDGTRGVSMGIE-SVVDENAGKSSDSLHDGMCSVCEMTVVWMQNQLRQNQTKERIINYINELCDRMPSPMGQSAVDCGQLSSMPTVSFTIGGKIFDLAPEEYILKV 461          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 3.504e-85
Identity = 147/219 (67.12%), Postives = 177/219 (80.82%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXXXXXXXXXXXXAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESXVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEV 659
            VFGG+DP HYKG HTYVPV++KGYWQFEMGDVLI G+TTG+C++GC+AIADSGTSLLAGPT IIT+IN  IGA+GV+SQECKT+V QYG+ IL++L+AETQP KICSQ+GLCTFDG  G S GI+                  MC+ACEMAV+WMQN+L +N+T D ILNY+NQLCD+LPSP GES VDC +L+SMP +SFTIGGK F L P EY+L+V
Sbjct:  240 VFGGMDPSHYKGNHTYVPVSQKGYWQFEMGDVLIGGKTTGFCASGCSAIADSGTSLLAGPTAIITEINEKIGATGVVSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLCTFDGKHGVSAGIK-SVVDDEAGESNGLQSGPMCNACEMAVVWMQNQLAQNKTQDLILNYINQLCDKLPSPMGESSVDCGSLASMPEISFTIGGKKFALKPEEYILKV 457          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 3.874e-84
Identity = 146/219 (66.67%), Postives = 176/219 (80.37%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXXXXXXXXXXXXAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESXVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEV 659
            +FGG+DP HY GEHTYVPVT+KGYWQF+MGDVL+ G++TG+C+ GC AIADSGTSLLAGPT IIT+IN  IGA+GV+SQECKT+V QYG+ IL++L+AETQP+KICSQ+GLCTFDGTRG S GI                   MCSACEMAV+WMQN+L +N+T D IL+YVNQLC+RLPSP GES VDC +L SMP++ FTIGGK F L P EY+L+V
Sbjct:  239 IFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIR-SVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKV 456          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 8.932e-81
Identity = 140/219 (63.93%), Postives = 177/219 (80.82%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXXXXXXXXXXXXAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESXVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEV 659
            VFGGVDP+H+KGEHTYVPVT+KGYWQFEMGDVLI  +TTG+C++GC AIADSGTSLLAG TTI+TQIN AIGA+GV+SQ+CK+LVDQYGK+++EML++E QP+KICSQM LC+FDG+   SM IE                   C  C   V+WMQN++R+NET + I+NYV++LC+RLPSP GES VDC +LSSMPN++FT+GGK F+L+P +YVL+V
Sbjct:  206 VFGGVDPNHFKGEHTYVPVTQKGYWQFEMGDVLIGDKTTGFCASGCAAIADSGTSLLAGTTTIVTQINQAIGAAGVMSQQCKSLVDQYGKSMIEMLLSEEQPEKICSQMKLCSFDGSHDTSMIIE---SVVDKSKGKSSGLPMRCVPCARWVVWMQNQIRQNETEENIINYVDKLCERLPSPMGESAVDCSSLSSMPNIAFTVGGKTFNLSPEQYVLKV 421          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 6.401e-79
Identity = 133/219 (60.73%), Postives = 166/219 (75.80%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXXXXXXXXXXXXAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESXVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEV 659
            VFGG+DP HYKG+HTYVPV++KGYWQF MGD+LIDG +TG+C+ GC AI DSGTSLLAGPT I+ Q+NHAIGA G+IS ECK +V +YG+ IL +LIA+T PQK+CSQ+GLC FDG R  S GIE                 AMCS CEMAV+W++N+LR N+T + ILNY NQLC+RLPSPNGES V C  +S MPN++FTI  K F L P +Y++++
Sbjct:  232 VFGGMDPKHYKGDHTYVPVSRKGYWQFNMGDLLIDGHSTGFCAKGCAAIVDSGTSLLAGPTAIVAQVNHAIGAEGIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLCMFDGKRSVSNGIE------SVVDKENLGSDAMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKL 444          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 52/75 (69.33%), Postives = 66/75 (88.00%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASG 227
            VFGG+DP+H++G+HTYVPVT + YWQF +GDVLI  ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+G
Sbjct:  140 VFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGANG 214          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.654e-26
Identity = 51/74 (68.92%), Postives = 65/74 (87.84%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            VFGG+DP+H++G+HTYVPVT + YWQF +GDVLI  ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+
Sbjct:  126 VFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN 199          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.654e-26
Identity = 51/74 (68.92%), Postives = 65/74 (87.84%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            VFGG+DP+H++G+HTYVPVT + YWQF +GDVLI  ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+
Sbjct:  126 VFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN 199          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CARDE_CYNCA (Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.654e-26
Identity = 51/74 (68.92%), Postives = 65/74 (87.84%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            VFGG+DP+H++G+HTYVPVT + YWQF +GDVLI  ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+
Sbjct:   84 VFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN 157          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.084e-17
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3
Query:    6 FGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA 221
            FG +D   Y G+ TYVP+T + YW+F M D  IDG++ G+C T C+AI DSGTSL+AGP   IT +N  +GA
Sbjct:  219 FGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGTTCHAICDSGTSLIAGPMADITALNEKLGA 290          
The following BLAST results are available for this feature:
BLAST of CF417530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ASPR_CUCPE7.544e-8867.12Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPR1_ORYSJ3.504e-8567.12Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
ASPR_HORVU3.874e-8466.67Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
CYPR1_CYNCA8.932e-8163.93Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPRX_ORYSJ6.401e-7960.73Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
CARDF_CYNCA3.334e-2769.33Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDH_CYNCA1.654e-2668.92Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDG_CYNCA1.654e-2668.92Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDE_CYNCA1.654e-2668.92Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CATD_DICDI4.084e-1752.78Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-460 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417530 ID=CF417530; Name=CF417530; organism=Citrus sinensis; type=EST; length=660bp
TTGTGTTTGGTGGGGTTGATCCTGATCATTACAAGGGTGAACACACATAT
GTGCCAGTGACTAAGAAAGGCTATTGGCAGTTTGAAATGGGTGATGTCCT
GATTGATGGTGAAACAACTGGATATTGTTCCACTGGTTGTAACGCAATTG
CTGATTCTGGAACCTCGTTGTTGGCGGGCCCAACAACCATAATTACACAA
ATTAATCATGCCATTGGAGCTTCTGGTGTCATAAGCCAAGAATGCAAGAC
TCTGGTTGACCAATATGGAAAAACCATATTGGAAATGCTGATAGCTGAGA
CACAACCACAAAAGATCTGCTCTCAGATGGGTCTATGTACTTTTGATGGG
ACTCGAGGTTTTAGCATGGGAATTGAGAGTGTCATAGATAAGAGCTCAGA
CAAGTCATCTGATGGTGTGCATGACTCTGCTATGTGCTCTGCTTGTGAGA
TGGCGGTCATATGGATGCAGAACAAGCTGAGGAGAAATGAGACAGCAGAT
CAAATCTTGAATTATGTAAATCAGCTTTGTGACCGTCTGCCCAGTCCAAA
TGGAGAATCANCTGTTGATTGTGACAATTTATCTTCCATGCCCAATGTTT
CATTTACNATTGGNGGCAAAGTATTTGACCTTGCACCGAATGAGTATGTT
CTTGAAGTGG
back to top