CF417560

Overview
NameCF417560
Unique NameCF417560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length253
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:69..317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417560 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.386e-25
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 1
Query:   34 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 252
            MATSTMALSSS F GKAV L+PS +E++  GR++MRKT +K+   SSGSPWYGPDRVKYLGPFSGE PSYLTGEFP
Sbjct:    1 MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFP 76          
BLAST of CF417560 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.810e-25
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 1
Query:   34 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 252
            MA STMALSS SF GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFP
Sbjct:    1 MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFP 76          
BLAST of CF417560 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.810e-25
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 1
Query:   34 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 252
            MA ST ALSS F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFP
Sbjct:    1 MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFP 75          
BLAST of CF417560 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.031e-25
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query:   34 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 252
            MA ST ALSS F GKAV L+PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFP
Sbjct:    1 MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFP 75          
BLAST of CF417560 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.532e-24
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 1
Query:   34 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 252
            MA +TMALSS SF G+AV L+PS  E++  GR+SMRKT +K V+S SPWYGPDRVKYLGPFSGE PSYLTGEFP
Sbjct:    1 MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFP 74          
BLAST of CF417560 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.613e-24
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 1
Query:   34 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 252
            MA +TMALSS SF G+AV L+PS +E+S  GRI+MRK  +KS  S SPWYGPDRVKYLGPFSGE PSYLTGEFP
Sbjct:    1 MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFP 74          
BLAST of CF417560 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.413e-24
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 1
Query:   34 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 252
            MA STMALSSS F GKAV L+PS +E++  G+++MRKT SK+  VSS SPWYGP+RVKYLGPFSGE PSYLTGEFP
Sbjct:    1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFP 76          
BLAST of CF417560 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.457e-24
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = 1
Query:   34 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 252
            MA +TMALSSS F GKAV L+PS +E++  G+++MRKT +K+  +SSGSPWYGPDRVKYLGPFSGE PSYLTGEFP
Sbjct:    1 MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFP 76          
BLAST of CF417560 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.603e-24
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 1
Query:   34 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 252
            MA +TMALSSS F GK V L+PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFP
Sbjct:    1 MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFP 76          
BLAST of CF417560 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.929e-24
Identity = 56/73 (76.71%), Postives = 60/73 (82.19%), Query Frame = 1
Query:   37 ATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 252
            A S+MALSS S  GKAV L PS  E+   GR+SMRKT +K VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP
Sbjct:    3 AASSMALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 72          
The following BLAST results are available for this feature:
BLAST of CF417560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CB2G_SOLLC1.386e-2575.00Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC1.810e-2575.00Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC1.810e-2573.33Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB25_NICPL4.031e-2572.00Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_TOBAC1.532e-2472.97Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC2.613e-2472.97Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB23_NICPL3.413e-2472.37Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB25_TOBAC4.457e-2471.05Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_PETSP7.603e-2471.05Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_SOYBN9.929e-2476.71Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-490 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417560 ID=CF417560; Name=CF417560; organism=Citrus sinensis; type=EST; length=253bp
CTAGAGCTCACCAACAACTCTGATCATTGTAAAATGGCAACCTCGACCAT
GGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAG
GCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGC
AAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTA
CTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCC
CTG
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