CF417570 | Citrus Genome Database

Overview


Name	CF417570
Unique Name	CF417570
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	692

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9540	contig	Csv1_Contig9540:125..815.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417570 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.092e-101
Identity = 124/132 (93.94%), Postives = 127/132 (96.21%), Query Frame = 1

Query:   61 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456
            GR+SMRKT SK+VSSGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLGN SLIHAQSILAIWA
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWA 142

HSP 2 Score: 95.5153 bits (236), Expect = 4.092e-101
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 3

Query:  474 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKETR 617
            MGAVEGYRIAGGPLGEVTDP+YPGGSFDPL LADDPEAFAELKVKE +
Sbjct:  148 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIK 195

HSP 3 Score: 51.9878 bits (123), Expect = 4.092e-101
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 2

Query:  617 NGRXAMFSMFGFFVQAIVTGKGPLE 691
            NGR AMFSMFGFFVQAIVTGKGPLE
Sbjct:  196 NGRLAMFSMFGFFVQAIVTGKGPLE 220

[Close]

BLAST of CF417570 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 2.868e-89
Identity = 116/153 (75.82%), Postives = 125/153 (81.70%), Query Frame = 1

Query:    4 SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456
            + VGK    A    ++   GRI+MRKT +K     SGSPWYG DRV YLGPLSG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWA
Sbjct:   12 ALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWA 161

HSP 2 Score: 83.5741 bits (205), Expect = 2.868e-89
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 3

Query:  474 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKETR 617
            MGAVEGY +AGG LGEV DPLY GGSFDPLGL DDPE FAELKVKE +
Sbjct:  167 MGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIK 214

HSP 3 Score: 51.2174 bits (121), Expect = 2.868e-89
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 2

Query:  617 NGRXAMFSMFGFFVQAIVTGKGPLE 691
            NGR AMFSMFGFFVQAIVTGKGP+E
Sbjct:  215 NGRLAMFSMFGFFVQAIVTGKGPIE 239

[Close]

BLAST of CF417570 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 3.881e-89
Identity = 124/158 (78.48%), Postives = 133/158 (84.18%), Query Frame = 1

Query:   13 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWA 171

HSP 2 Score: 96.2857 bits (238), Expect = 3.881e-89
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 3

Query:  474 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKETR 617
            MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPEAFAELKVKE +
Sbjct:  177 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIK 224

[Close]

BLAST of CF417570 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.793e-86
Identity = 117/157 (74.52%), Postives = 127/157 (80.89%), Query Frame = 1

Query:    1 SSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456
            SS  G+ + L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGP S   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWA
Sbjct:   10 SSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWA 163

HSP 2 Score: 78.9518 bits (193), Expect = 2.793e-86
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3

Query:  474 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKETR 617
            MG +EGYR+ GG LGE  DPL PGG+FDPLGLADDPEA AELKVKE +
Sbjct:  169 MGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIK 216

HSP 3 Score: 51.2174 bits (121), Expect = 2.793e-86
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 2

Query:  617 NGRXAMFSMFGFFVQAIVTGKGPLE 691
            NGR AMFSMFGFFVQAIVTGKGP+E
Sbjct:  217 NGRLAMFSMFGFFVQAIVTGKGPIE 241

[Close]

BLAST of CF417570 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 2.502e-85
Identity = 133/153 (86.93%), Postives = 143/153 (93.46%), Query Frame = 1

Query:    4 SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456
            SF GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:   12 SFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 164

HSP 2 Score: 53.9138 bits (128), Expect = 2.502e-85
Identity = 36/78 (46.15%), Postives = 41/78 (52.56%), Query Frame = 2

Query:  458 CQVVLDGSR*GLQNCWRAAR*SD*PIVPRWQL*SIGFG**PGGFC*AQG*GNXNGRXAMFSMFGFFVQAIVTGKGPLE 691
            CQVVL G+  G +           P+ P      +G    P  F   +     NGR AMFSMFGFFVQAIVTGKGPLE
Sbjct:  165 CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 242

HSP 3 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 65/134 (48.51%), Postives = 79/134 (58.96%), Query Frame = 3

Query:  240 LCQEP*TRSHPLQMGHVGSSWMRLPGALG---PQ---RSQVR*GCVV--QGGSSDLQRGRA*LLGKPKLDPRPEHLGHLGFARWSWMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKETR 617
            L  +P T +   ++  +   W  L GALG   P+   R+ V+ G  V  + GS     G    LG P L      L  +   +   MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE +
Sbjct:   86 LSADPETFAKNRELEVIHCRWAML-GALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA-IWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIK 217

[Close]

BLAST of CF417570 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 4.258e-85
Identity = 133/154 (86.36%), Postives = 143/154 (92.86%), Query Frame = 1

Query:    1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456
            S F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:   10 SPFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 163

HSP 2 Score: 53.9138 bits (128), Expect = 4.258e-85
Identity = 36/78 (46.15%), Postives = 41/78 (52.56%), Query Frame = 2

Query:  458 CQVVLDGSR*GLQNCWRAAR*SD*PIVPRWQL*SIGFG**PGGFC*AQG*GNXNGRXAMFSMFGFFVQAIVTGKGPLE 691
            CQVVL G+  G +           P+ P      +G    P  F   +     NGR AMFSMFGFFVQAIVTGKGPLE
Sbjct:  164 CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 241

HSP 3 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 65/134 (48.51%), Postives = 79/134 (58.96%), Query Frame = 3

Query:  240 LCQEP*TRSHPLQMGHVGSSWMRLPGALG---PQ---RSQVR*GCVV--QGGSSDLQRGRA*LLGKPKLDPRPEHLGHLGFARWSWMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKETR 617
            L  +P T +   ++  +   W  L GALG   P+   R+ V+ G  V  + GS     G    LG P L      L  +   +   MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE +
Sbjct:   85 LSADPETFAKNRELEVIHCRWAML-GALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA-IWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIK 216

[Close]

BLAST of CF417570 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 5.553e-85
Identity = 132/154 (85.71%), Postives = 143/154 (92.86%), Query Frame = 1

Query:    1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456
            S+F GKAV L+PS +E++  GR++MRKT +K+   SSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:   11 STFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 164

HSP 2 Score: 53.9138 bits (128), Expect = 5.553e-85
Identity = 36/78 (46.15%), Postives = 41/78 (52.56%), Query Frame = 2

Query:  458 CQVVLDGSR*GLQNCWRAAR*SD*PIVPRWQL*SIGFG**PGGFC*AQG*GNXNGRXAMFSMFGFFVQAIVTGKGPLE 691
            CQVVL G+  G +           P+ P      +G    P  F   +     NGR AMFSMFGFFVQAIVTGKGPLE
Sbjct:  165 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 242

HSP 3 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 67/134 (50.00%), Postives = 79/134 (58.96%), Query Frame = 3

Query:  240 LCQEP*TRSHPLQMGHVGSSWMRLPGALG---PQ---RSQVR*GCVV--QGGSSDLQRGRA*LLGKPKLDPRPEHLGHLGFARWSWMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKETR 617
            L  +P T +   ++  +   W  L GALG   P+   R+ V+ G  V  + GS     G    LG P L      L  +   +   MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE +
Sbjct:   86 LSADPETFAKNRELEVIHCRWAML-GALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA-IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIK 217

[Close]

BLAST of CF417570 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 9.449e-85
Identity = 132/154 (85.71%), Postives = 144/154 (93.51%), Query Frame = 1

Query:    1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456
            SSF GKAV L+PS +E++  G+++MRKT +K+  +SSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:   11 SSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 164

HSP 2 Score: 53.9138 bits (128), Expect = 9.449e-85
Identity = 36/78 (46.15%), Postives = 41/78 (52.56%), Query Frame = 2

Query:  458 CQVVLDGSR*GLQNCWRAAR*SD*PIVPRWQL*SIGFG**PGGFC*AQG*GNXNGRXAMFSMFGFFVQAIVTGKGPLE 691
            CQVVL G+  G +           P+ P      +G    P  F   +     NGR AMFSMFGFFVQAIVTGKGPLE
Sbjct:  165 CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLE 242

HSP 3 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 64/134 (47.76%), Postives = 78/134 (58.21%), Query Frame = 3

Query:  240 LCQEP*TRSHPLQMGHVGSSWMRLPGALG---PQ---RSQVR*GCVV--QGGSSDLQRGRA*LLGKPKLDPRPEHLGHLGFARWSWMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKETR 617
            L  +P T +   ++  +   W  L GALG   P+   R+ V+ G  V  + GS     G    LG P L      L  +   +   MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK  +
Sbjct:   86 LSADPETFAKNRELEVIHCRWAML-GALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA-IWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIK 217

[Close]

BLAST of CF417570 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 9.450e-85
Identity = 132/154 (85.71%), Postives = 143/154 (92.86%), Query Frame = 1

Query:    1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456
            S F GKAV L+PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:   10 SPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 163

HSP 2 Score: 53.9138 bits (128), Expect = 9.450e-85
Identity = 35/78 (44.87%), Postives = 41/78 (52.56%), Query Frame = 2

Query:  458 CQVVLDGSR*GLQNCWRAAR*SD*PIVPRWQL*SIGFG**PGGFC*AQG*GNXNGRXAMFSMFGFFVQAIVTGKGPLE 691
            CQVVL G+  G +           P+ P      +G    P  F   +     NGR AMFSMFGFFVQA+VTGKGPLE
Sbjct:  164 CQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLE 241

HSP 3 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 64/134 (47.76%), Postives = 78/134 (58.21%), Query Frame = 3

Query:  240 LCQEP*TRSHPLQMGHVGSSWMRLPGALG---PQ---RSQVR*GCVV--QGGSSDLQRGRA*LLGKPKLDPRPEHLGHLGFARWSWMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKETR 617
            L  +P T +   ++  +   W  L GALG   P+   R+ V+ G  V  + GS     G    LG P L      L  +   +   MGAVEGYR+AG PLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE +
Sbjct:   85 LSADPETFAKNRELEVIHCRWAML-GALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA-IWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIK 216

[Close]

BLAST of CF417570 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 1.233e-84
Identity = 131/151 (86.75%), Postives = 140/151 (92.72%), Query Frame = 1

Query:    4 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456
            SF G+AV L+PS  E++  GR+SMRKT +K V+S SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:   12 SFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 162

HSP 2 Score: 53.5286 bits (127), Expect = 1.233e-84
Identity = 35/78 (44.87%), Postives = 41/78 (52.56%), Query Frame = 2

Query:  458 CQVVLDGSR*GLQNCWRAAR*SD*PIVPRWQL*SIGFG**PGGFC*AQG*GNXNGRXAMFSMFGFFVQAIVTGKGPLE 691
            CQV+L G+  G +           P+ P      +G    P  F   +     NGR AMFSMFGFFVQAIVTGKGPLE
Sbjct:  163 CQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

HSP 3 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 65/134 (48.51%), Postives = 79/134 (58.96%), Query Frame = 3

Query:  240 LCQEP*TRSHPLQMGHVGSSWMRLPGALG---PQ---RSQVR*GCVV--QGGSSDLQRGRA*LLGKPKLDPRPEHLGHLGFARWSWMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKETR 617
            L  +P T +   ++  +   W  L GALG   P+   R+ V+ G  V  + GS     G    LG P L      L  +   +   MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE +
Sbjct:   84 LSADPETFAKNRELEVIHCRWAML-GALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA-IWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIK 215

The following BLAST results are available for this feature:

BLAST of CF417570 vs. ExPASy Swiss-Prot

BLAST of CF417570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72


Match Name	E-value	Identity	Description
CB21_SOYBN	4.092e-101	93.94	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]
CB48_MAIZE	2.868e-89	75.82	Chlorophyll a-b binding protein 48, chloroplastic ...	[more]
CB2B_PINSY	3.881e-89	78.48	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB21_PINTH	2.793e-86	74.52	Chlorophyll a-b binding protein type I, chloroplas...	[more]
CB24_TOBAC	2.502e-85	86.93	Chlorophyll a-b binding protein 40, chloroplastic ...	[more]
CB21_TOBAC	4.258e-85	86.36	Chlorophyll a-b binding protein 16, chloroplastic ...	[more]
CB2G_SOLLC	5.553e-85	85.71	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]
CB25_TOBAC	9.449e-85	85.71	Chlorophyll a-b binding protein 50, chloroplastic ...	[more]
CB25_NICPL	9.450e-85	85.71	Chlorophyll a-b binding protein E, chloroplastic O...	[more]
CB22_TOBAC	1.233e-84	86.75	Chlorophyll a-b binding protein 21, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-500 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417570 ID=CF417570; Name=CF417570; organism=Citrus sinensis; type=EST; length=692bp
TCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCT
GAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTT
CTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCA
CTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGCGACTA
CGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGA
ACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTT
GGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGA
GGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTG
ACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATC
TGGGCTTTGCCAGGTGGTCTTGGATGGGAGCCGTTGAGGGTTACAGAATT
GCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAG
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
AGGTTAAGGAAACNAGAATGGAAGGNTGGCTATGTTCTCCATGTTTGGTT
TCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGA