CF417582

Overview
NameCF417582
Unique NameCF417582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9552 contig Csv1_Contig9552:400..1062. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 1.708e-95
Identity = 170/215 (79.07%), Postives = 188/215 (87.44%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 663
            E+LLFEALREGL+EEMDRDP V VMGEDVGHYGGSYKVTKG A+KYGDLR+LDTPIAENSFTGM IGAAMTGLRP+VEGMNMGFLLLAFNQI+NN GMLHYTSG  FT             QLGAEHSQRLESYFQS+PG+Q+VACSTP NAKGL+K++IRSENPVILFEHVLLYNLKE IPD EY+  LE+AE+VRPG  +TILTYSRMR+HV+
Sbjct:    3 EMLLFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGANFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQLVACSTPINAKGLIKSSIRSENPVILFEHVLLYNLKETIPDNEYLVCLEKAEIVRPGTDITILTYSRMRHHVL 217          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 346.28 bits (887), Expect = 8.478e-95
Identity = 167/215 (77.67%), Postives = 190/215 (88.37%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 663
            E+LLFEALR+GL+EEMDRDP V VMGEDVGHYGGSYKVTKG A++YGDLR+LDTPIAENSFTGM IGAAMTGLRP+VEGMNMGFLLLAFNQI+NN GMLHYTSGG FT             QLGAEHSQRLESYFQS+PG+QMVACSTPYNAKGL+K+AIRS+NP+ILFEHVLLYNLKE + +EEY+  LE+AE+VRPG  +TILTYSRMR++V+
Sbjct:    3 EVLLFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSDNPIILFEHVLLYNLKEDLAEEEYLVCLEKAEVVRPGNDITILTYSRMRHNVL 217          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 8.774e-92
Identity = 160/215 (74.42%), Postives = 185/215 (86.05%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 663
            E LL+EAL EG+ EE++RDP V V+GED+GHYGGSYKVTKGL +KYG+LR+LDTPIAENSFTG+ IGAAMTGLRPI+EGMNMGFLLLAFNQI+NN GMLHYTSGG FT             QLGAEHSQRLESYFQS+PG+QMVACSTPYNAKGL+K+AIRS+NP+I FEHVLLYN+KE IP +EY+  LE+AE+VR G  +TILTYSRMRYHV+
Sbjct:    3 EKLLYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTGIAIGAAMTGLRPIIEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTTPLVVRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSQNPIIFFEHVLLYNIKENIPQKEYLVPLEKAELVRSGNQITILTYSRMRYHVL 217          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 3.334e-91
Identity = 162/215 (75.35%), Postives = 183/215 (85.12%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 663
            E+LLFEALR+ L+EEM RDP V VMGEDVGHYGGSYKVTKG  +KYGDLR+LDTPIAENSFTGM IGAAMTGLRPIVEGMNMGFLLLAFNQI+NN GMLHYTSGG F              QLGAEHSQRLESYFQS+PG+QMVACSTPYN KGL+K+AIR++NPVI FEHVLLYNL E + ++EY+  LE+AE+VRPG  +TILTYSRMR+HV+
Sbjct:    3 EVLLFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNGKGLLKSAIRNDNPVIFFEHVLLYNLNENLIEQEYLLCLEKAEVVRPGNDITILTYSRMRHHVL 217          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.603e-85
Identity = 153/215 (71.16%), Postives = 175/215 (81.40%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 663
            ++ +F+ALR   +EEM +DP VCV+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAA+TGLRPIVEGMNM FLLLAFNQISNN GML YTSGG FT             QLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPV+ FEHVLLYNL+E IP EEY   L + E VR G+ +TILTYSRMR+HV+
Sbjct:    3 KIFMFDALRAATDEEMAKDPTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQEEIPQEEYFLPLNKVEFVRKGKDITILTYSRMRHHVI 217          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.603e-85
Identity = 152/214 (71.03%), Postives = 179/214 (83.64%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHV 660
            ++ +F+ALR   +EEM++D  VCV+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAA+TGLRPIVEGMNM FLLLAFNQISNN GML YTSGG FT             QLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPV+ FEHVLLYNL+E IP++EY+  L++AE+VR G+ +TILTYSRMR+HV
Sbjct:    3 KVFMFDALRAATDEEMEKDLTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQEEIPEDEYLIPLDKAEVVRKGKDITILTYSRMRHHV 216          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.314e-84
Identity = 153/215 (71.16%), Postives = 175/215 (81.40%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 663
            E+L+F+ALRE  +EEM  D  V ++GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSF GM IGAA+TGLRPIVEGMNM FLLLAFNQISNN GML YTSGG F              QLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPVI FEHVLLYNLK+ +P++EY   L++AE+VR G  VTILTYSRMR+HVM
Sbjct:    3 EVLMFDALREATDEEMQNDSSVFILGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFMGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFQIPIVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVIFFEHVLLYNLKDELPNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVM 217          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 6.733e-84
Identity = 148/216 (68.52%), Postives = 177/216 (81.94%), Query Frame = 1
Query:   16 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 663
            H+L ++EALRE ++EEM RD  V V+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAAMTGL+P+VEGMN+ FLLLAFNQISNN GMLHYTSGG ++             QL AEHSQR+E+YFQ++PG+++VACSTPYNAKGL+KAAIR  NPV+  EHVLLYNLK+ IP +EY+  L++A++VR G  VTI+TYSRM +HVM
Sbjct:    3 HKLFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSFTGMAIGAAMTGLKPVVEGMNLSFLLLAFNQISNNAGMLHYTSGGNWSIPLVIRGPGGIGKQLSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAAIRDNNPVLFLEHVLLYNLKQEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVM 218          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.006e-79
Identity = 147/214 (68.69%), Postives = 169/214 (78.97%), Query Frame = 1
Query:   22 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 663
            + L+EALR  ++EEM +D +V ++GEDVGHYGGSYKVTK L  KYGDLRVLD PIAENSFTGM IGAAMTGLRPIVEGMNMGF+LLAFNQISNN  ML YTSGG F              QL AEHSQRLES FQSIPG+Q+VACST YNAKGL+K+AI  + P++  EHVLLYNLK  +PDEEY   L++AE+VR G  VTI+TYSRMRYHV+
Sbjct:    4 MFLYEALRAAIDEEMGKDSNVFIVGEDVGHYGGSYKVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTGLRPIVEGMNMGFMLLAFNQISNNLSMLQYTSGGNFNIPVVIRGPGGIGKQLAAEHSQRLESCFQSIPGLQIVACSTAYNAKGLLKSAIIEKKPILFLEHVLLYNLKGFVPDEEYYLPLDKAEVVRSGSDVTIVTYSRMRYHVL 217          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.168e-76
Identity = 138/212 (65.09%), Postives = 166/212 (78.30%), Query Frame = 1
Query:   28 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 663
            LFEAL   ++EEM R+  V ++GED+GHYGGSYKVT+ L  KYG+ RV+DTPIAENSF G  IGAAMTGL  +VEGMNMGF+LLAF+QISNN GML  TSGG +              QLGAEHSQRLE YFQS+PG+Q+VACSTPYNAKGL+K+AIRS+NP+   EHVLLYNLK  +PD +Y+  LE+AE+VR G  +TILTYSRMRY+V+
Sbjct:    6 LFEALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAENSFVGAAIGAAMTGLVTVVEGMNMGFILLAFSQISNNMGMLSATSGGHYHIPIVLRGPGGVGKQLGAEHSQRLECYFQSVPGLQIVACSTPYNAKGLLKSAIRSKNPIFFLEHVLLYNLKAEVPDNDYVLPLEKAEIVRQGNDITILTYSRMRYNVI 217          
The following BLAST results are available for this feature:
BLAST of CF417582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAPU1.708e-9579.07Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR8.478e-9577.67Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU8.774e-9274.42Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL3.334e-9175.35Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE1.603e-8571.16Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU1.603e-8571.03Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL2.314e-8471.16Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME6.733e-8468.52Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYACA1.006e-7968.69Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI5.168e-7665.09Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-512 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417582 ID=CF417582; Name=CF417582; organism=Citrus sinensis; type=EST; length=663bp
GCATCAAAGCAAGGGCACGAACTTTTACTTTTTGAAGCTCTACGAGAAGG
CTTGGAAGAAGAAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAG
ATGTTGGTCACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGAT
AAGTATGGGGATCTCAGGGTTCTTGACACCCCTATTGCTGAGAACTCTTT
CACTGGTATGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTG
AAGGAATGAACATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAAC
AACTGTGGTATGCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAAT
AGTTATCCGTGGACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATT
CCCAACGCCTTGAGTCATATTTTCAATCAATCCCTGGAATTCAAATGGTG
GCATGCTCGACCCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCG
AAGTGAGAACCCAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCA
AGGAAAGGATTCCAGATGAGGAATACATTTGTAATCTTGAGGAAGCTGAG
ATGGTTAGGCCTGGGGAGCATGTCACTATTTTAACCTATTCTCGAATGAG
GTATCATGTGATG
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