CF417588

Overview
NameCF417588
Unique NameCF417588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9975 contig Csv1_Contig9975:48..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 4.729e-105
Identity = 190/199 (95.48%), Postives = 194/199 (97.49%), Query Frame = 3
Query:   30 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 626
            MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS SRI AWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRETPEGQKA++ LKDVYA WV
Sbjct:    1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGQKAIQTLKDVYAQWV 199          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 2.197e-102
Identity = 185/199 (92.96%), Postives = 191/199 (95.98%), Query Frame = 3
Query:   30 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 626
            MVKICCIGAGYVGGPTMAVIALKCP +EVAVVDISV RINAWNSD LPIYEPGLD VVKQCRGKNLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVS SDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRETPEG KAV+ LK+VYAHWV
Sbjct:    1 MVKICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFKAVQTLKNVYAHWV 199          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 3.172e-101
Identity = 184/199 (92.46%), Postives = 189/199 (94.97%), Query Frame = 3
Query:   30 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 626
            MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RINAWNSDQLPIYEPGLD +VKQCRGKNLFFSTDVEKHV EADIVFVSVNTPTKT GLGAGKAADLTYWESAAR+IADVS SDKIVVEKSTVPVKTAEAIEKIL HNSKGIKFQILSNPEFLAEGTAI DLFNPDRVLIGGRETPEG KAV+ LK+VYA+WV
Sbjct:    1 MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQCRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRETPEGFKAVQTLKEVYANWV 199          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 3.655e-73
Identity = 135/199 (67.84%), Postives = 161/199 (80.90%), Query Frame = 3
Query:   33 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 626
            +K+CCIGAGYVGGPT AV+ALKCP I + +VD S  RI  WNSD+LPIYEPGLD VVK+CR  NLFFSTD+E  + EAD++F+SVNTPTKT G G G+AADL Y ESAAR+IA++++S+KIVVEKSTVPV+ AE+I  IL  N K GI + ILSNPEFLAEGTAI DL N DRVLIGG ETPEG +AV+ L  +Y HW+
Sbjct:    1 MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKCRNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWI 199          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.619e-71
Identity = 134/198 (67.68%), Postives = 156/198 (78.79%), Query Frame = 3
Query:   36 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 626
            KICCIGAGYVGGPT +VIA  CP I V VVD++ +RINAWNS  LPIYEPGL  VV+ CRGKNLFFST+++  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQKAV+AL  VY HWV
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQKAVRALCAVYEHWV 203          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.619e-71
Identity = 134/198 (67.68%), Postives = 156/198 (78.79%), Query Frame = 3
Query:   36 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 626
            KICCIGAGYVGGPT +VIA  CP I V VVD++ SRINAWNS  LPIYEPGL  VV+ CRGKNLFFST+++  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWV
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWV 203          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 2.619e-71
Identity = 135/198 (68.18%), Postives = 156/198 (78.79%), Query Frame = 3
Query:   36 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 626
            KICCIGAGYVGGPT +VIA  CP I V VVDI+ SRINAWNS  LPIYEPGL  VV+ CRGKNLFFST+++  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWV
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDINESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWV 203          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.468e-71
Identity = 132/198 (66.67%), Postives = 157/198 (79.29%), Query Frame = 3
Query:   36 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 626
            KICCIGAGYVGGPT +VIA  CP I+V VVD++ +RINAWNSD LPIYEPGL  VV+ CRG+NLFFST ++  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ++PEGQKAV+AL  VY HWV
Sbjct:    6 KICCIGAGYVGGPTCSVIAQMCPKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCRGRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDSPEGQKAVRALCAVYEHWV 203          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 5.835e-71
Identity = 133/198 (67.17%), Postives = 156/198 (78.79%), Query Frame = 3
Query:   36 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 626
            KICCIGAGYVGGPT +VIA  CP I V VVD++ +RINAWNS  LPIYEPGL  VV+ CRGKNLFFST+++  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWV
Sbjct:    6 KICCIGAGYVGGPTCSVIARMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWV 203          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 6.451e-70
Identity = 133/198 (67.17%), Postives = 155/198 (78.28%), Query Frame = 3
Query:   36 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 626
            KICCIGAGYVGGPT +VIA   P I V VVD++ SRINAWNS  LPIYEPGL  VV+ CRGKNLFFST+++  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWV
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMRPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWV 203          
The following BLAST results are available for this feature:
BLAST of CF417588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
UGDH_SOYBN4.729e-10595.48UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH1_ARATH2.197e-10292.96Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH2_ARATH3.172e-10192.46Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH_DROME3.655e-7367.84UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_MOUSE2.619e-7167.68UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_HUMAN2.619e-7167.68UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_BOVIN2.619e-7168.18UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_CHICK4.468e-7166.67UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_RAT5.835e-7167.17UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]
UGDH_PONAB6.451e-7067.17UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-518 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417588 ID=CF417588; Name=CF417588; organism=Citrus sinensis; type=EST; length=628bp
ACTGAGGTTATATTGATTAGTAAAGGAAAATGGTGAAGATCTGCTGCATC
GGTGCTGGGTATGTTGGGGGGCCGACAATGGCAGTCATTGCACTGAAGTG
CCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTCGGATCAATG
CCTGGAACAGTGACCAGCTCCCCATCTATGAGCCTGGACTTGATGGTGTG
GTAAAGCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGATGTTGAGAA
GCATGTCTCTGAGGCTGATATTGTCTTTGTTTCGGTCAATACCCCAACTA
AAACTCAGGGTCTTGGTGCTGGCAAAGCTGCAGATCTGACATACTGGGAG
AGCGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAAAATTGTTGT
TGAGAAATCAACAGTTCCTGTAAAAACTGCTGAGGCAATTGAAAAAATTT
TGACCCACAACAGCAAGGGAATCAAATTCCAGATCCTTTCAAACCCGGAG
TTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTAACCCAGATCGGGT
CCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCGTCAAAGCCT
TGAAGGATGTGTATGCACACTGGGTCCC
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