CF417595

Overview
NameCF417595
Unique NameCF417595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3302 contig Csv1_Contig3302:218..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417595 vs. ExPASy Swiss-Prot
Match: Y5258_ARATH (Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 8.767e-31
Identity = 62/97 (63.92%), Postives = 75/97 (77.32%), Query Frame = 3 
Query:    3 LVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDFPTVLGKA 293
            LV+VKFKE   V++I+KG++ LVS+ID VKSFEWG+D E  +MLRQGFTHAF MTF  K+ Y  F SHP HVEFSA F+A I+KIVLLDFP    K+
Sbjct:    9 LVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKS 105
[Close]
BLAST of CF417595 vs. ExPASy Swiss-Prot
Match: POP3_ARATH (Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.163e-15
Identity = 36/93 (38.71%), Postives = 62/93 (66.67%), Query Frame = 3 
Query:    3 LVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDF 272
            +++  FK+GV    +E+++KG   LV+ I+ +K+F WG+DV   E L QG+TH F  TF  KE    + +HP+HVEF+  F  +++K++++D+
Sbjct:   11 VLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVS-IENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102
The following BLAST results are available for this feature:
BLAST of CF417595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5258_ARATH8.767e-3163.92Uncharacterized protein At5g22580 OS=Arabidopsis t... [more]
POP3_ARATH5.163e-1538.71Probable protein Pop3 OS=Arabidopsis thaliana GN=A... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-525 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417595 ID=CF417595; Name=CF417595; organism=Citrus sinensis; type=EST; length=467bp
ACTTGGTGATTGTTAAGTTCAAGGAAGGTGTGGTTGTGGAGGATATTGTC
AAAGGGATGAAAAAGCTAGTTTCAGAGATTGATGCTGTCAAATCTTTTGA
ATGGGGCCAAGATGTAGAAGGGCAGGAGATGCTTAGGCAAGGCTTCACAC
ATGCATTCTTGATGACATTCAACAAGAAGGAAGACTATACAACCTTTGCA
AGCCATCCCAGCCACGTCGAATTCTCGGCTACATTTTCAGCTGCTATTGA
GAAGATTGTCCTGCTTGATTTCCCTACCGTGCTTGGCAAAGCACCAGCAG
CATGACACTCCAAAATTCTAGGCGATAATAATTAAGTGAGATTAGTATTA
ATCTGCTATATGCGTGTGTATGTTTGGTTTGCTTATCTCTATGAGTTAAT
ATTATTATTTGCCAGTATCAGTAACTATTTGGTTTGTCACAATATATAGC
CTTATTATAAGTTCTTT
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