CF417680

Overview
NameCF417680
Unique NameCF417680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417680 vs. ExPASy Swiss-Prot
Match: CY11_SOLTU (Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum GN=CYCL PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.435e-38
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 1
Query:    1 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSV 237
            AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPY+NE AARFANGGAYPPDLSLITKARH+GQNYVFALLT YRDPPAGVS+
Sbjct:  144 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTAYRDPPAGVSI 222          
BLAST of CF417680 vs. ExPASy Swiss-Prot
Match: CY12_SOLTU (Cytochrome c1-2, heme protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=CYCL PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.755e-37
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 1
Query:    1 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSV 237
            AAEIEV DGPNDEGEMFTRPGKLSDRFPQPY NE AARFANGGAYPPDLSLITKARH+GQNYVFALLT YRDPPAGVS+
Sbjct:   84 AAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYPNEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTAYRDPPAGVSI 162          
BLAST of CF417680 vs. ExPASy Swiss-Prot
Match: CY1_MOUSE (Cytochrome c1, heme protein, mitochondrial OS=Mus musculus GN=Cyc1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.847e-27
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSV 237
            A E+EV DGPND+GEMF RPGKLSD FP+PY N +AAR AN GA PPDLS I +ARH G++YVF+LLTGY +PP GVS+
Sbjct:  149 AEEVEVQDGPNDDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSL 227          
BLAST of CF417680 vs. ExPASy Swiss-Prot
Match: CY1_HUMAN (Cytochrome c1, heme protein, mitochondrial OS=Homo sapiens GN=CYC1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.283e-26
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSV 237
            AAE+EV DGPN++GEMF RPGKL D FP+PY N +AAR AN GA PPDLS I +ARH G++YVF+LLTGY +PP GVS+
Sbjct:  149 AAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSL 227          
BLAST of CF417680 vs. ExPASy Swiss-Prot
Match: CY1_BOVIN (Cytochrome c1, heme protein, mitochondrial OS=Bos taurus GN=CYC1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.283e-26
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSV 237
            A E+EV DGPN++GEMF RPGKLSD FP+PY N +AAR AN GA PPDLS I +ARH G++YVF+LLTGY +PP GVS+
Sbjct:  149 AEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSL 227          
BLAST of CF417680 vs. ExPASy Swiss-Prot
Match: CY1_SCHPO (Cytochrome c1, heme protein, mitochondrial OS=Schizosaccharomyces pombe GN=cyt1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.791e-24
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSVISAPTFQHSF 267
            A+E+E  DGP+DEG MF RPGKLSD  P PY N +AAR +N GA PPDLS + + RH GQ+Y+++LLTGY +PPAGV V     F   F
Sbjct:  130 ASEVEYEDGPDDEGNMFKRPGKLSDFLPPPYPNVEAARASNNGAAPPDLSCVVRGRHGGQDYIYSLLTGYTEPPAGVEVPDGMNFNPFF 218          
BLAST of CF417680 vs. ExPASy Swiss-Prot
Match: CY1_NEUCR (Cytochrome c1, heme protein, mitochondrial OS=Neurospora crassa GN=cyt-1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.978e-23
Identity = 55/90 (61.11%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    1 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRD-PPAGVSVISAPTFQHSF 267
            A E E    PND+GE+  RPGKLSD  P PY N++AARFAN GA PPDLSLI KARH G +Y+F+LLTGY D PPAG SV +   F   F
Sbjct:  138 AEENEYDTEPNDQGEIEKRPGKLSDYLPDPYKNDEAARFANNGALPPDLSLIVKARHGGCDYIFSLLTGYPDEPPAGASVGAGLNFNPYF 227          
BLAST of CF417680 vs. ExPASy Swiss-Prot
Match: CY1_DICDI (Cytochrome c1, heme protein, mitochondrial OS=Dictyostelium discoideum GN=cyc1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    1 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSVISAPTFQHSF 267
            AA+  V+DGP+ EG+MF R G+++D  P+PY N  AARFAN GA PPDLSL+ KAR   ++YVF+LLTGY +PPAGV V+    F   F
Sbjct:  101 AADTTVMDGPDSEGDMFERKGQVTDFHPKPYPNSNAARFANNGALPPDLSLVIKARGAHEDYVFSLLTGYCEPPAGVRVVGGQYFNPYF 189          
BLAST of CF417680 vs. ExPASy Swiss-Prot
Match: CY1_KLULA (Cytochrome c1, heme protein, mitochondrial OS=Kluyveromyces lactis GN=CYT1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.403e-21
Identity = 51/78 (65.38%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGY-RDPPAGV 231
            A E E  D P+D+G    RPGKL+D  P PY NEQAAR AN GA PPDLSLI KARH G +Y+FALLTGY  +PPAGV
Sbjct:  114 AEEFEYDDEPDDQGNPKKRPGKLADYVPGPYPNEQAARAANQGALPPDLSLIVKARHGGPDYIFALLTGYPEEPPAGV 191          
BLAST of CF417680 vs. ExPASy Swiss-Prot
Match: CY1_YEAST (Cytochrome c1, heme protein, mitochondrial OS=Saccharomyces cerevisiae GN=CTC1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.097e-20
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRD-PPAGVSV 237
            A E E  D P+++G    RPGKLSD  P PY NEQAAR AN GA PPDLSLI KARH G +Y+F+LLTGY D PPAGV++
Sbjct:  129 AEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKARHGGCDYIFSLLTGYPDEPPAGVAL 208          
The following BLAST results are available for this feature:
BLAST of CF417680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CY11_SOLTU4.435e-3893.67Cytochrome c1-1, heme protein, mitochondrial OS=So... [more]
CY12_SOLTU3.755e-3792.41Cytochrome c1-2, heme protein, mitochondrial (Frag... [more]
CY1_MOUSE7.847e-2769.62Cytochrome c1, heme protein, mitochondrial OS=Mus ... [more]
CY1_HUMAN2.283e-2668.35Cytochrome c1, heme protein, mitochondrial OS=Homo... [more]
CY1_BOVIN2.283e-2668.35Cytochrome c1, heme protein, mitochondrial OS=Bos ... [more]
CY1_SCHPO2.791e-2457.30Cytochrome c1, heme protein, mitochondrial OS=Schi... [more]
CY1_NEUCR8.978e-2361.11Cytochrome c1, heme protein, mitochondrial OS=Neur... [more]
CY1_DICDI2.000e-2256.18Cytochrome c1, heme protein, mitochondrial OS=Dict... [more]
CY1_KLULA8.403e-2165.38Cytochrome c1, heme protein, mitochondrial OS=Kluy... [more]
CY1_YEAST1.097e-2063.75Cytochrome c1, heme protein, mitochondrial OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-610 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417680 ID=CF417680; Name=CF417680; organism=Citrus sinensis; type=EST; length=676bp
GCTGCTGAGATTGAGGTCGTTGATGGACCTAACGATGAGGGTGAGATGTT
CACCCGTCCAGGTAAACTCAGCGATCGTTTTCCTCAGCCATATTCCAATG
AACAGGCAGCAAGGTTTGCTAATGGAGGGGCATATCCTCCAGATTTAAGT
CTTATTACCAAAGCTCGTCATGATGGTCAGAATTATGTGTTTGCTCTTCT
AACTGGTTATCGTGATCCTCCTGCTGGTGTTTCGGTAATTTCTGCTCCAA
CCTTTCAACACAGTTTCCATATTTTTCTGTTTGTGCAATACTAATTTTAT
GCTTTTGTAGCAATTCTCATTTGTTATCATATGTATACACGTTTTCGGAA
GTAGGGGAGGAGAGTCCAGCAAAAAAAAAGTTTTGATACTGGAATGAACA
TGTAGTTGCTCTTGATTTTGGTGTTTGTTAAATTGTGTCGCCGCTTCTGA
TATCCCTATGAGATTTAGTGGGGAAGCTGGCCTGTTCATCTTGTCTAGCT
GATGTTTTCCAGATCACTTATCCATCAGATTTTGGTGTTTGTTAAATTGT
GTCGCCGCTTCTGATATACCTATGAGATCTAGTGGGGAAGCTGGCCTGTT
CATCTTGTCTAGCTGATGTTTTCCAGATCACTGATCCATCACTGTAATAC
CCAAGTGTTTTAAGAGTTACAAACTG
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