CF417683

Overview
NameCF417683
Unique NameCF417683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417683 vs. ExPASy Swiss-Prot
Match: VILI3_ARATH (Villin-3 OS=Arabidopsis thaliana GN=VLN3 PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.142e-79
Identity = 142/199 (71.36%), Postives = 161/199 (80.90%), Query Frame = 3
Query:    3 VATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRDPHLFTFSFNKGKFEVEEVYNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLECLSPKVPLYKVTEGNEPCFFTTFFSWDPTKATVQGKLIPKEGGITL 599
            VATSLNS +CFLLQSG++MF W GN ST EQQ+LAAKVAEFLKPG  IKHAKEGTESS+FWF LGGKQ++TSKKVS E VRDPHLF+FSFN+GKF+VEE++NF Q             HAEVFVWVGQ VD KEKQ+AFE GQ YI++A SLE LSPKVPLYK+TEGNEPCFFTT+FSWD TKATVQG    K+  + L
Sbjct:  541 VATSLNSYDCFLLQSGTSMFLWVGNHSTHEQQELAAKVAEFLKPGTTIKHAKEGTESSSFWFALGGKQNFTSKKVSSETVRDPHLFSFSFNRGKFQVEEIHNFDQDDLLTEEMHLLDTHAEVFVWVGQCVDPKEKQTAFEIGQRYINLAGSLEGLSPKVPLYKITEGNEPCFFTTYFSWDSTKATVQGNSYQKKAALLL 739          
BLAST of CF417683 vs. ExPASy Swiss-Prot
Match: VILI2_ARATH (Villin-2 OS=Arabidopsis thaliana GN=VLN2 PE=1 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 3.877e-77
Identity = 134/197 (68.02%), Postives = 156/197 (79.19%), Query Frame = 3
Query:    3 VATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRDPHLFTFSFNKGKFEVEEVYNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLECLSPKVPLYKVTEGNEPCFFTTFFSWDPTKATVQGKLIPKEGGI 593
            VATSLNS ECFLLQSG++MF WHGNQST EQ +LA KVAEFLKPG+ +KHAKEGTESS FWF LGGKQ++TSKK S E +RDPHLF+F+FN+GKF+VEE+YNF+Q             HAEVFVWVGQ V+ KEKQ+ FE GQ YID+A SLE L PKVP+YK+ EGNEPCFFTT+FSWD TKA VQG    K+  +
Sbjct:  539 VATSLNSYECFLLQSGTSMFLWHGNQSTHEQLELATKVAEFLKPGITLKHAKEGTESSTFWFALGGKQNFTSKKASSETIRDPHLFSFAFNRGKFQVEEIYNFAQDDLLTEDIYFLDTHAEVFVWVGQCVEPKEKQTVFEIGQKYIDLAGSLEGLHPKVPIYKINEGNEPCFFTTYFSWDATKAIVQGNSFQKKASL 735          
BLAST of CF417683 vs. ExPASy Swiss-Prot
Match: VILI4_ARATH (Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.010e-41
Identity = 85/189 (44.97%), Postives = 117/189 (61.90%), Query Frame = 3
Query:    3 VATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRDPHLFTFSFNKGKFEVEEVYNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLECLSPKVPLYKVTEGNEPCFFTTFF-SWDPTKATVQG 566
            VA SLNSS  ++L + S++FTW GN ST   Q+LA +  + +KP    +  KEG+ES  FW  LGGK  Y+S+K++ E  RDPHLF+ +F K   +V E+YNF+Q             H+E+FVWVGQ V  K K  A   G+ +I+  + LE LSP+ P+Y + EG EP FFT FF SWD +K+ + G
Sbjct:  540 VAASLNSSYYYILHNDSSVFTWAGNLSTATDQELAERQLDLIKPNQQSRAQKEGSESEQFWELLGGKAEYSSQKLTKEPERDPHLFSCTFTKEVLKVTEIYNFTQDDLMTEDIFIIDCHSEIFVWVGQEVVPKNKLLALTIGEKFIEKDSLLEKLSPEAPIYVIMEGGEPSFFTRFFTSWDSSKSAMHG 728          
BLAST of CF417683 vs. ExPASy Swiss-Prot
Match: VILI1_ARATH (Villin-1 OS=Arabidopsis thaliana GN=VLN1 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.487e-33
Identity = 71/188 (37.77%), Postives = 105/188 (55.85%), Query Frame = 3
Query:    3 VATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRDPHLFTFSFNKGKFEVEEVYNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLECLSPKVPLYKVTEGNEPCFFTTFFSWDPTKATVQG 566
            VATSLNSS  ++LQ G++ FTW G  S+    ++  ++  FL       + +EG E+  FW  LGGK  Y  +K   + + +PHLFT S +    +V+E+YNF Q              +EV+VW+G + + K K+ A   G  +++M    E L+ + P+Y VTEG+EP FFT FF W P KA + G
Sbjct:  537 VATSLNSSYSYILQYGASAFTWIGKLSSDSDHEVLDRMLYFLDTSCQPIYIREGNETDTFWNLLGGKSEYPKEKEMRKQIEEPHLFTCSCSSDVLKVKEIYNFVQDDLTTEDVFLLDCQSEVYVWIGSNSNIKSKEEALTLGLKFLEMDILEEGLTMRTPVYVVTEGHEPPFFTRFFEWVPEKANMHG 724          
BLAST of CF417683 vs. ExPASy Swiss-Prot
Match: GELS_HOMAM (Gelsolin, cytoplasmic OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 59/183 (32.24%), Postives = 91/183 (49.73%), Query Frame = 3
Query:    3 VATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRDPHLFTFSFN-KGKFEVEEVYNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLECLSPKVPLYKVTEGNEPCFFTTFF-SWDP 545
            VA SLNS + F+L++    + W G  ++ E++ +  KV E + PG  +    EG E   FW  LGGK  Y + +     +  P LF  + +  G   V E+ +F+Q               EV+VWVGQ  D +EK+ AF   +NYI    +   L   V + ++ +G EP  FT+ F +W+P
Sbjct:  548 VAGSLNSDDVFVLETPGKTYLWIGKGASEEEKAMGEKVVELVSPGRDMVTVAEGEEDDDFWGGLGGKGDYQTARDLDRPLLYPRLFHCTISPAGCLRVNEMSDFAQEDLNEDDVMVLDSGDEVYVWVGQGSDDQEKEKAFTMAENYIKTDPTERTLDATV-ILRINQGEEPAAFTSIFPAWNP 729          
BLAST of CF417683 vs. ExPASy Swiss-Prot
Match: AVIL_HUMAN (Advillin OS=Homo sapiens GN=AVIL PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 59/183 (32.24%), Postives = 96/183 (52.46%), Query Frame = 3
Query:    6 ATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTS-KKVSPEIVR-DPHLFTFSFNKGKFEVEEVYNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLECLSPKVPLYKVTEGNEPCFFTTFF-SWDP 545
            A+SLNS++ FLL++ +  + W+G  S+ +++ +A ++A  L  G +     EG E + FW  LGGK  Y + K++  EI+     LF  S   G+F V E+ +F+Q               +VF+W+G   ++ EK+SA    Q Y+   T      P  P+  + +G EP  FT +F +WDP
Sbjct:  534 ASSLNSNDVFLLRTQAEHYLWYGKGSSGDERAMAKELASLLCDG-SENTVAEGQEPAEFWDLLGGKTPYANDKRLQQEILDVQSRLFECSNKTGQFVVTEITDFTQDDLNPTDVMLLDTWDQVFLWIGAEANATEKESALATAQQYLH--THPSGRDPDTPILIIKQGFEPPIFTGWFLAWDP 713          
BLAST of CF417683 vs. ExPASy Swiss-Prot
Match: VILI_CHICK (Villin-1 OS=Gallus gallus GN=VIL1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 59/189 (31.22%), Postives = 94/189 (49.74%), Query Frame = 3
Query:    6 ATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFL----KPGVAIKHAKEGTESSAFWFPLGGKQSYTSKK----VSPEIVRDPHLFTFSFNKGKFEVEEVYNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLECLSPKVPLYKVTEGNEPCFFTTFF-SWDP 545
            A SLNS++ F+L++ S+ + W+G   + +++++   VA+ +    KP VA     EG E   FW  LGGK SY + K     +P +   P LF  S   G+F   E+ +F+Q               ++F W+G+  +  EK++A E  Q Y+        L    P+  V +G EP  FT +F +WDP
Sbjct:  537 AASLNSNDVFVLKTPSSCYLWYGKGCSGDEREMGKMVADIISKTEKPVVA-----EGQEPPEFWVALGGKTSYANSKRLQEENPSV--PPRLFECSNKTGRFLATEIVDFTQDDLDENDVYLLDTWDQIFFWIGKGANESEKEAAAETAQEYLRSHPGSRDLD--TPIIVVKQGFEPPTFTGWFMAWDP 716          
BLAST of CF417683 vs. ExPASy Swiss-Prot
Match: VILI_MOUSE (Villin-1 OS=Mus musculus GN=Vil1 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 58/185 (31.35%), Postives = 94/185 (50.81%), Query Frame = 3
Query:    6 ATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPE--IVRDPHLFTFSFNKGKFEVEEVYNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLECLSPKVPLYKVTEGNEPCFFTTFF-SWDPTK 551
            ATSLNS++ F+L++ S  + W G   + +++++A  VA+ +      +   EG E + FW  LGGK  Y + K   E   V  P LF  S   G+F   E+++F+Q               +VF W+G+  + +EK++A    Q Y+        L  + P+  V +G+EP  FT +F +WDP K
Sbjct:  537 ATSLNSNDVFILKTPSCCYLWCGKGCSGDEREMAKMVADTIS-RTEKQVVVEGQEPANFWMALGGKAPYANTKRLQEENQVITPRLFECSNQTGRFLATEIFDFNQDDLEEEDVFLLDVWDQVFFWIGKHANEEEKKAAATTVQEYLKTHPGNRDL--ETPIIVVKQGHEPPTFTGWFLAWDPFK 718          
BLAST of CF417683 vs. ExPASy Swiss-Prot
Match: VILL_HUMAN (Villin-like protein OS=Homo sapiens GN=VILL PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 64/187 (34.22%), Postives = 90/187 (48.13%), Query Frame = 3
Query:    6 ATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVR--DPHLFTFSFNKGKFEVEEVYNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLECLSPKVPLYKVTEGNE-PCFFTTFFSWDPTKAT 557
            A+SLNSS+ FLL + S  + W G     +Q+++A  V   +      +   EG E   FW  LGG+  Y S K  PE V    P LF  S + G   + EV  FSQ               E+F+W+G++  + E + A  +GQ Y  + T     SP  P+  V +G+E P F   FF+WDP K T
Sbjct:  530 ASSLNSSDIFLLVTASVCYLWFGKGCNGDQREMARVVVTVISRKNE-ETVLEGQEPPHFWEALGGRAPYPSNKRLPEEVPSFQPRLFECSSHMGCLVLAEVGFFSQEDLDKYDIMLLDTWQEIFLWLGEA--ASEWKEAVAWGQEY--LKTHPAGRSPATPIVLVKQGHEPPTFIGWFFTWDPYKWT 711          
BLAST of CF417683 vs. ExPASy Swiss-Prot
Match: VILI_HUMAN (Villin-1 OS=Homo sapiens GN=VIL1 PE=1 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 57/185 (30.81%), Postives = 93/185 (50.27%), Query Frame = 3
Query:    6 ATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPE--IVRDPHLFTFSFNKGKFEVEEVYNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLECLSPKVPLYKVTEGNEPCFFTTFF-SWDPTK 551
            A  LNS++ F+L++ S  + W G   + +++++A  VA+ +      +   EG E + FW  LGGK  Y + K   E  +V  P LF  S   G+F   E+ +F+Q               +VF W+G+  + +EK++A    Q Y  + T      P+ P+  V +G+EP  FT +F +WDP K
Sbjct:  537 ANFLNSNDVFVLKTQSCCYLWCGKGCSGDEREMAKMVADTIS-RTEKQVVVEGQEPANFWMALGGKAPYANTKRLQEENLVITPRLFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKAAATTAQEY--LKTHPSGRDPETPIIVVKQGHEPPTFTGWFLAWDPFK 718          
The following BLAST results are available for this feature:
BLAST of CF417683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
VILI3_ARATH4.142e-7971.36Villin-3 OS=Arabidopsis thaliana GN=VLN3 PE=1 SV=1[more]
VILI2_ARATH3.877e-7768.02Villin-2 OS=Arabidopsis thaliana GN=VLN2 PE=1 SV=2[more]
VILI4_ARATH2.010e-4144.97Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1[more]
VILI1_ARATH4.487e-3337.77Villin-1 OS=Arabidopsis thaliana GN=VLN1 PE=2 SV=2[more]
GELS_HOMAM1.956e-2032.24Gelsolin, cytoplasmic OS=Homarus americanus PE=1 S... [more]
AVIL_HUMAN1.830e-1832.24Advillin OS=Homo sapiens GN=AVIL PE=1 SV=2[more]
VILI_CHICK5.326e-1831.22Villin-1 OS=Gallus gallus GN=VIL1 PE=1 SV=2[more]
VILI_MOUSE2.024e-1731.35Villin-1 OS=Mus musculus GN=Vil1 PE=2 SV=2[more]
VILL_HUMAN2.643e-1734.22Villin-like protein OS=Homo sapiens GN=VILL PE=2 S... [more]
VILI_HUMAN2.643e-1730.81Villin-1 OS=Homo sapiens GN=VIL1 PE=1 SV=4[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-613 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417683 ID=CF417683; Name=CF417683; organism=Citrus sinensis; type=EST; length=692bp
CGGTGGCAACATCACTGAACTCCTCTGAGTGTTTCCTTCTGCAATCTGGC
TCAACAATGTTCACATGGCATGGAAATCAAAGTACCTTTGAGCAGCAGCA
ATTAGCCGCAAAAGTTGCCGAATTTTTGAAGCCTGGAGTTGCAATAAAAC
ATGCTAAAGAAGGGACTGAGAGCTCAGCCTTCTGGTTTCCACTTGGGGGA
AAACAAAGTTACACCAGCAAAAAAGTTTCTCCAGAGATTGTCAGAGATCC
TCACTTGTTCACATTTTCATTTAATAAAGGAAAATTTGAGGTTGAGGAAG
TTTACAACTTTTCTCAAGATGATCTATTGACAGAGGATATATTGATACTC
GACACGCATGCAGAAGTGTTTGTTTGGGTTGGTCAGTCCGTAGACTCCAA
AGAAAAACAAAGTGCTTTTGAATTTGGCCAGAACTACATAGACATGGCCA
CATCTCTGGAGTGTTTATCTCCAAAAGTTCCACTATACAAAGTCACCGAA
GGAAATGAGCCATGTTTCTTCACAACATTCTTTTCATGGGATCCAACAAA
AGCTACAGTTCAGGGGAAACTCATTCCAAAAGAAGGTGGCATTACTCTTT
GGGGCAAGTCATGCTGCAGAGGATAAGTCCCATGCAAATCAGGGAGGGCC
AACTCAAAGGGCTTCAGCTTTAGCTGCCTTATCCTCTGCTTT
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