CF417688

Overview
NameCF417688
Unique NameCF417688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417688_ssr297 microsatellite CF417688_ssr297:297..311. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10604 contig Csv1_Contig10604:408..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417688 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.665e-47
Identity = 106/189 (56.08%), Postives = 120/189 (63.49%), Query Frame = 1
Query:   79 LGGLLNATCGNATELIIAIFALYERKIDVXKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAA---SSDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFEAQEXXXXXXX---VTEETPVIGFWSGXAWLVGMTAIIALLSEFVVGTIEDAS 627
            +GGLLNATCGNATELIIAI AL   K+ V KY                  F GGIAN+R+EQ++DRKQADVN                 KYAA    S+ +  K +L LSR SSIVMLI YIAYL+FQLWTHR+ FEAQ+            EETPVIGFWSG AWLVGMT +IALLSE+VV TIEDAS
Sbjct:  128 VGGLLNATCGNATELIIAILALANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDRKQADVNFFLLLMGLLCHLLPLLLKYAATGEVSTSMINKMSLTLSRTSSIVMLIAYIAYLIFQLWTHRQLFEAQQDDDDAYDDEVSVEETPVIGFWSGFAWLVGMTIVIALLSEYVVDTIEDAS 316          
BLAST of CF417688 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 1.238e-44
Identity = 101/187 (54.01%), Postives = 116/187 (62.03%), Query Frame = 1
Query:   79 LGGLLNATCGNATELIIAIFALYERKIDVXKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKY---AAASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFEAQEXXXXXXX-VTEETPVIGFWSGXAWLVGMTAIIALLSEFVVGTIEDAS 627
            LGGLLNATCGNATELIIAI AL   K+ V KY                  FCGGIAN+R+EQ++DRKQADVN                  Y     AS+ + +   L +SR  SIVMLI YIAYLVFQLWTHR+ F+AQE        V +ET VI FWSG AWLVGMT +IALLSE+VV TIE+AS
Sbjct:  128 LGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAVLSDMQLSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQEDEYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVVATIEEAS 314          
BLAST of CF417688 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.610e-36
Identity = 86/188 (45.74%), Postives = 107/188 (56.91%), Query Frame = 1
Query:   79 LGGLLNATCGNATELIIAIFALYERKIDVXKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSD-----ITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFEAQEXXXXXXXVTEETPVIGFWSGXAWLVGMTAIIALLSEFVVGTIEDAS 627
            +GGLLNATCGNATELIIA+FAL + KI+V K                   FCGG+ NL   Q YDR Q+DV++                +YA A+ +      +A A+L LSRA S VML  Y+AYL FQL THR+ FE QE         +E P +GF S   WL  MTA+I++LSE+VVGTIE  S
Sbjct:  119 VGGLLNATCGNATELIIALFALLKGKIEVVKCSLLGSVLSNLLLVLGTSLFCGGVVNLGARQPYDRNQSDVSTALLFLAVLCHSAPLLLRYAVAAGEHSVSATSAAASLDLSRACSFVMLASYVAYLFFQLKTHRQLFEPQEVDGGDAGDDDEEPALGFASALFWLALMTAVISVLSEYVVGTIEPTS 306          
BLAST of CF417688 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.965e-31
Identity = 84/190 (44.21%), Postives = 101/190 (53.16%), Query Frame = 1
Query:   79 LGGLLNATCGNATELIIAIFALYERKIDVXKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSD---ITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFEAQ----EXXXXXXXVTEETPVIGFWSGXAWLVGMTAIIALLSEFVVGTIEDAS 627
            +GGLLNAT GN TE+IIA+ AL E KI+V K                   F  GIANLR  Q YD KQA VN+                +YA  S D   ++  A L LSRA SI+MLI Y+AYL FQL THR+ FE Q    +         ++ PV+GF S   WL  MT + ALLS +VV TIE AS
Sbjct:  127 VGGLLNATFGNVTEVIIALLALREGKIEVVKCSLLGSILSNLLLVLGTSLFLAGIANLRAHQPYDTKQAHVNTALLMLAVLCHSLPLMLRYAVTSGDHAIVSGDAALHLSRACSILMLIAYLAYLFFQLNTHRQLFEPQQVEDDDDDDLVIAQDDEPVLGFSSAMIWLALMTLLTALLSGYVVSTIEAAS 316          
BLAST of CF417688 vs. ExPASy Swiss-Prot
Match: CAX1C_ORYSJ (Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.919e-29
Identity = 72/186 (38.71%), Postives = 104/186 (55.91%), Query Frame = 1
Query:   82 GGLLNATCGNATELIIAIFALYERKIDVXKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSD-ITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFEAQEXXXXXXXVTEET---PVIGFWSGXAWLVGMTAIIALLSEFVVGTIEDAS 627
            GG++NATCGN  ELIIA+FAL++ K+++ K+                    GGI N+ KE+  D++QADV+                 KY +++ D I + + +QLSR+ +IVMLI Y   L+FQL THR+ FE +E         ++     VIGF S   WL+GM  + A+LS +VV TIE+AS
Sbjct:  135 GGIMNATCGNVPELIIALFALHKNKMEILKWSLLGSILSNLLLVLGSSLLFGGIVNIGKERPLDKRQADVSIGLLLLGVLCHIATLVSKYTSSTGDSINSSSVMQLSRSCAIVMLIAYFGSLMFQLKTHRQIFELEEDSSDSSSSEDDATDKSVIGFASAMVWLIGMAVVTAMLSSYVVTTIEEAS 320          
BLAST of CF417688 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.225e-27
Identity = 71/194 (36.60%), Postives = 101/194 (52.06%), Query Frame = 1
Query:   79 LGGLLNATCGNATELIIAIFALYERKIDVXKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWT-----------HREFFEAQEXXXXXXXVTEETPVIGFWSGXAWLVGMTAIIALLSEFVVGTIEDAS 627
            +GGL+NATCGNATE+IIAI A+ +RK+ + K                   F GGI+NLRK Q +D +Q D+NS                ++   + +      + LSRASS VMLI Y+A+L+F L++            RE     +         EE  VIG WS   WL+ MT ++ALLS+++V TI+DA+
Sbjct:  129 VGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDK----EEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAA 318          
BLAST of CF417688 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 66/187 (35.29%), Postives = 88/187 (47.06%), Query Frame = 1
Query:   79 LGGLLNATCGNATELIIAIFALYERKIDVXKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVMLIGYIAYLVFQLWTHREFF---EAQEXXXXXXXVTEETPVIGFWSGXAWLVGMTAIIALLSEFVVGTIEDAS 627
            +GGLLNAT GN TELII+IFAL    I V +                   FCGG+   +K+Q +D+  A VNS                 Y    S++ A  + L LSR SS +MLI Y AYL FQL +    +   + +          +E P I  W    WL  +TA ++LLS ++V  IE AS
Sbjct:  130 VGGLLNATFGNVTELIISIFALKNGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFYQKDQVFDKGIATVNSGLLLMAVMGILFPAVLHY--THSEVHAGSSELALSRFSSCIMLIAYAAYLFFQLKSQSNSYSPLDEESNQNEETSAEDEDPEISKWEAIIWLSILTAWVSLLSGYLVDAIEGAS 314          
BLAST of CF417688 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.599e-18
Identity = 67/187 (35.83%), Postives = 87/187 (46.52%), Query Frame = 1
Query:   79 LGGLLNATCGNATELIIAIFALYERKIDVXKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVMLIGYIAYLVFQLWTHREFFEAQEXXXXXXXVT---EETPVIGFWSGXAWLVGMTAIIALLSEFVVGTIEDAS 627
            +GGLLNAT GN TELII+IFAL    I V +                   FCGG+   +KEQ +D+  A VNS                 Y    S++ A  + L LSR SS +ML+ Y AYL FQL +    +            T   +E P I  W    WL  +TA ++LLS ++V  IE AS
Sbjct:  130 VGGLLNATFGNVTELIISIFALKSGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFSQKEQVFDKGNAVVNSGLLLMAVMGLLFPAVLHY--THSEVHAGSSELALSRFSSCIMLVAYAAYLFFQLKSQPSSYTPLTEETNQNEETSDDDEDPEISKWEAIIWLSILTAWVSLLSGYLVDAIEGAS 314          
BLAST of CF417688 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.877e-18
Identity = 62/187 (33.16%), Postives = 88/187 (47.06%), Query Frame = 1
Query:   79 LGGLLNATCGNATELIIAIFALYERKIDVXKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKAT-LQLSRASSIVMLIGYIAYLVFQLWTHREFFE---AQEXXXXXXXVTEETPVIGFWSGXAWLVGMTAIIALLSEFVVGTIEDAS 627
            +GGLLNAT GNATE+IIAI+AL    I V +                   F GGI +  K+Q + +  A VNS                 +    S++   A+ + LSR SS +ML+ Y +YL FQL      +    ++E         +E   IG W   AWL  +T  +++LSE++V  IE AS
Sbjct:  106 VGGLLNATFGNATEMIIAIYALKNGMIRVVQQSLLGSILSNMLLVMGCAFFAGGIVHRNKDQVFSKATAVVNSGLLLMAVMGLMFPAVLHF--THSEVRQGASEVSLSRFSSCIMLVAYASYLYFQLSGRNNAYSPIGSEEMPNEDAAEEDEESEIGMWESIAWLAMLTLWVSILSEYLVNAIEGAS 290          
BLAST of CF417688 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 61/184 (33.15%), Postives = 84/184 (45.65%), Query Frame = 1
Query:   79 LGGLLNATCGNATELIIAIFALYERKIDVXKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKAT-LQLSRASSIVMLIGYIAYLVFQLWTHREFFEAQEXXXXXXXVTEETPVIGFWSGXAWLVGMTAIIALLSEFVVGTIEDAS 627
            +GGLLNAT GN  ELII+I AL    I V +                   FCGG+    K+Q +D++ A V+S                 Y    S++ A ++ L LSR  S +ML+ Y AYL FQL +   F+  +          +E P I  W    WL   TA ++LLS ++V  IE  S
Sbjct:  141 VGGLLNATFGNVIELIISIIALKNGMIRVVQLTLLGSILSNILLVLGCAFFCGGLVFPGKDQVFDKRNAVVSSGMLLMAVMGLLFPTFLHYT--HSEVHAGSSELALSRFISCIMLVAYAAYLFFQLKSQPSFYTEKTNQNEETSNDDEDPEISKWEAIIWLSIFTAWVSLLSGYLVDAIEGTS 322          
The following BLAST results are available for this feature:
BLAST of CF417688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CAX3_ARATH2.665e-4756.08Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1_ARATH1.238e-4454.01Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]
CAX1A_ORYSJ3.610e-3645.74Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX1B_ORYSJ5.965e-3144.21Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX1C_ORYSJ1.919e-2938.71Vacuolar cation/proton exchanger 1c OS=Oryza sativ... [more]
CAX4_ARATH5.225e-2736.60Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX2_ARATH1.167e-1835.29Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX5_ARATH2.599e-1835.83Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX3_ORYSJ9.877e-1833.16Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]
CAX6_ARATH1.092e-1633.15Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-618 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417688 ID=CF417688; Name=CF417688; organism=Citrus sinensis; type=EST; length=629bp
AAACGCTAGTAAATTACGACAAAACCTAGAAATTTGTTTTCTATTACTAG
TTGGCAATAAAGATGCCGAAACGATGCCCTGGGGGGATTATTGAACGCGA
CATGCGGCAATGCCACGGAGCTCATCATAGCAATTTTTGCCCTATACGAA
CGTAAAATTGACGTGGNCAAATATTCTCTTTTGGGTTCCATTCTCTCAAA
CCTTCTTCTGGTTCTTGGCACTTCGCTCTTCTGTGGAGGGATTGCCAATC
TCAGAAAGGAACAAAAATACGATAGAAAACAAGCCGATGTCAACTCGCTG
CTGCTGCTGCTGGCATTGCTGTGCCACATGTTACCATTGCTATTCAAATA
CGCTGCGGCCTCCTCTGATATTACTGCCAAGGCGACCCTTCAGCTATCAA
GAGCCAGCAGCATTGTAATGCTGATTGGTTACATCGCCTATCTCGTCTTC
CAATTGTGGACACACCGGGAATTTTTTGAAGCTCAAGAGGATTCANAGGA
CGACGATGATGTGACTGAAGAAACGCCTGTGATTGGGTTTTGGAGTGGAT
TNGCTTGGCTTGTTGGGATGACTGCTATCATTGCTTTACTATCAGAATTT
GTAGTGGGCACAATTGAGGATGCTTCAAA
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