CF417691

Overview
NameCF417691
Unique NameCF417691
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417691 vs. ExPASy Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.817e-49
Identity = 94/146 (64.38%), Postives = 109/146 (74.66%), Query Frame = 3
Query:    3 SAISDIVAQKLTGIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 440
            S +SD+V+QKL+GI           V+F   +LGP  HF H  LDK FKGKKDT TVAKKV+LEQLT SP N+L+FMIYYGVV+E  PW  V+ +IKK YPTVQ T+WTF+PVVGWIN+ YVPL FRVI HSLVA  WGIFL LRA
Sbjct:   34 SGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRA 179          
BLAST of CF417691 vs. ExPASy Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15
Identity = 52/152 (34.21%), Postives = 83/152 (54.61%), Query Frame = 3
Query:    3 SAISDIVAQKLTGIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV--VVEGRPWRDVKTKIKKD-YPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALPK 449
            S IS +VAQK                ++G     P  H+ H+ILD++FK  KD      K++++QL  +P+ N+ F   Y V  +++G+P + +  K+  D +PT++  SW  WP+   IN  +VP   RV+F +LV  CWGI+L++ A  K
Sbjct:   37 SFISSVVAQKFIEKKKINWNAVVKFTVWGLIS-SPLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAF---YSVLAILDGKP-KSILFKLYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILATKK 182          
The following BLAST results are available for this feature:
BLAST of CF417691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PMP22_ARATH1.817e-4964.38Peroxisomal membrane protein PMP22 OS=Arabidopsis ... [more]
PX24C_DICDI1.314e-1534.21PXMP2/4 family protein 3 OS=Dictyostelium discoide... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-621 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417691 ID=CF417691; Name=CF417691; organism=Citrus sinensis; type=EST; length=659bp
TGTCAGCAATCAGCGACATAGTTGCTCAGAAACTCACTGGCATTCAGAAA
CTTCAGCTGAGGAGGCTACTTCTTAAAGTGCTTTTTGGATGTGCTTATCT
TGGACCGTTCAGACATTTCCTGCATTTAATCCTGGATAAAATTTTCAAGG
GGAAAAAAGATACCAGTACAGTTGCCAAGAAGGTGGTGTTGGAACAGTTG
ACATCTTCTCCTTGGAACAACTTGATGTTTATGATTTACTATGGGGTTGT
TGTTGAAGGAAGACCTTGGAGGGATGTGAAAACTAAAATCAAGAAGGACT
ACCCGACAGTGCAGTATACATCATGGACGTTCTGGCCAGTTGTGGGGTGG
ATAAATCATCTATATGTACCACTGCAGTTCCGTGTGATTTTCCACAGCTT
AGTTGCAATGTGTTGGGGGATATTTCTGAATCTTCGGGCTTTGCCTAAAG
CTAAGTGACTTGAAAATATAAATATGCACGTCAGTGTAGTAATGCTTGTT
ACTCTATGCACATTTTTTATGTAGCTCAAAGTATATTTCGGGCAGCCAAG
AATACTAATGTGATTATTTCTCTATTTTTCTGAATATTTGATGGATTAGT
GAGGTTATCAATTAAGTTATTCTCATGTTCGGTTTGAAAAAAAAAAAAAA
AAAAAAAAA
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