CF417697

Overview
NameCF417697
Unique NameCF417697
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417697_ssr1 microsatellite CF417697_ssr1:1..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig374 contig Csv1_Contig374:27..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417697 vs. ExPASy Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.213e-63
Identity = 114/139 (82.01%), Postives = 122/139 (87.77%), Query Frame = 2
Query:  278 VADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWP 694
            VADISGLTPCK+SKQFAKR              YAP+SAPALA+ A +EKTKRRFDNYGKYGLLCGSDGLPHLIV+GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASR++FRGF WP
Sbjct:   66 VADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRIIFRGFIWP 204          
BLAST of CF417697 vs. ExPASy Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.595e-62
Identity = 129/210 (61.43%), Postives = 136/210 (64.76%), Query Frame = 2
Query:   68 IPTNLSKPLL-KPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWP 694
            IPTNL KPL  KP+  S  S A  SK +                                           +ADI+GLTPCKESKQFAKR              YA DSAPALAIKATMEKTK+RFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP  KEIIIDVPLAS L+FRGFSWP
Sbjct:    5 IPTNLYKPLATKPKHLSSSSFAPRSKIVCQQENDQQQPKKLELAKVGANAAAALALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWP 214          
BLAST of CF417697 vs. ExPASy Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.595e-62
Identity = 115/138 (83.33%), Postives = 119/138 (86.23%), Query Frame = 2
Query:  281 ADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWP 694
            ADISGLTPCKESKQFAKR              YAPDSAPALAIKATMEKTKRRFDNYGK GLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP  KEIIIDVPLA++L+FRGFSWP
Sbjct:   78 ADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWP 215          
BLAST of CF417697 vs. ExPASy Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.264e-59
Identity = 108/138 (78.26%), Postives = 120/138 (86.96%), Query Frame = 2
Query:  281 ADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWP 694
            ADI+GLTPCKESK FAKR              YAPDSAPALAI+AT++KTKRRF+NYGK+GLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+SGEKKPAM+EIIIDV LA+R++ RGF WP
Sbjct:   77 ADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWP 214          
BLAST of CF417697 vs. ExPASy Swiss-Prot
Match: PSAF_CHLRE (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.360e-37
Identity = 80/143 (55.94%), Postives = 95/143 (66.43%), Query Frame = 2
Query:  278 VADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQR----HWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWP 694
            +ADI+GLTPC ESK +AK               Y  DSAPA+A+KATME+TK RF NY K GLLCG+DGLPHLI          H GE   P   FLY+AG+IG+VGR YLIA+ GE KP  KEIIIDVPLA++L ++G  WP
Sbjct:   61 MADIAGLTPCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCGNDGLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWP 203          
BLAST of CF417697 vs. ExPASy Swiss-Prot
Match: PSAF_PORYE (Photosystem I reaction center subunit III OS=Porphyra yezoensis GN=psaF PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.956e-37
Identity = 72/138 (52.17%), Postives = 91/138 (65.94%), Query Frame = 2
Query:  281 ADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWP 694
            A+++GL PCK+S  F KR              Y  D+ PALA+   +EKTK RF  YG+ GLLCG+DGLPHLI  G     G+F+ PGLLFLYI GWIGWVGR YL++++   KP  KEII+DVPLA + +  GF+WP
Sbjct:   20 AEVAGLVPCKDSAAFNKRMVNSVKKLQARLAKYDADTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAIKFMSSGFAWP 157          
BLAST of CF417697 vs. ExPASy Swiss-Prot
Match: PSAF_GUITH (Photosystem I reaction center subunit III OS=Guillardia theta GN=psaF PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.812e-37
Identity = 72/138 (52.17%), Postives = 88/138 (63.77%), Query Frame = 2
Query:  281 ADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWP 694
            AD++GL PCK SK+F +R              Y P++ P LA++  + KTK RF  YG  GLLCG+DGLPHLI  G   H GEF+ PGL FLYIAGWIGWVGR+Y+   S   KP  KEIIIDVP+A   +  G+ WP
Sbjct:   22 ADVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPPYLALETQINKTKNRFTQYGNAGLLCGTDGLPHLIADGRWSHAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWP 159          
BLAST of CF417697 vs. ExPASy Swiss-Prot
Match: PSAF_PORPU (Photosystem I reaction center subunit III OS=Porphyra purpurea GN=psaF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36
Identity = 71/138 (51.45%), Postives = 91/138 (65.94%), Query Frame = 2
Query:  281 ADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWP 694
            A+++GL PCK+S  F KR              Y  ++ PALA+   +EKTK RF  YG+ GLLCG+DGLPHLI  G     G+F+ PGLLFLYI GWIGWVGR YL++++   KP  KEII+DVPLA + +  GF+WP
Sbjct:   24 AEVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWP 161          
BLAST of CF417697 vs. ExPASy Swiss-Prot
Match: PSAF_CYAPA (Photosystem I reaction center subunit III OS=Cyanophora paradoxa GN=psaF PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.248e-35
Identity = 71/138 (51.45%), Postives = 89/138 (64.49%), Query Frame = 2
Query:  281 ADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWP 694
            AD++GL PC +S  F +R              Y P SAPA A++  ++KT++RFD Y   GLLCG+DGLPHLI  G   H GEF  PGLLFLYIAG+IGW GRSYL A++       KEIIID+P+A + V +GF WP
Sbjct:   25 ADVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAPAEALQKQIDKTQQRFDKYRNSGLLCGADGLPHLITDGRWSHAGEFTIPGLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWP 162          
BLAST of CF417697 vs. ExPASy Swiss-Prot
Match: PSAF_GRATL (Photosystem I reaction center subunit III OS=Gracilaria tenuistipitata var. liui GN=psaF PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.837e-34
Identity = 70/137 (51.09%), Postives = 87/137 (63.50%), Query Frame = 2
Query:  284 DISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWP 694
            + +GLT C+ES  F KR              Y  ++ PA+A++  + KTK RF+ Y K G+LCG+DGLPHLI  G   H GEF+ PG+LFLYI GWIGWVGR YL  IS   KP  KEII+DVPLA +    GF+WP
Sbjct:   27 ETAGLTKCQESPAFTKRLNNSVKKLETRLAKYDANTPPAIALQTQIIKTKIRFNKYAKSGILCGTDGLPHLITDGRWNHAGEFMIPGVLFLYITGWIGWVGRGYLRDISQTTKPTEKEIILDVPLALKYCLSGFTWP 163          
The following BLAST results are available for this feature:
BLAST of CF417697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PSAF_ARATH3.213e-6382.01Photosystem I reaction center subunit III, chlorop... [more]
PSAF_SPIOL1.595e-6261.43Photosystem I reaction center subunit III, chlorop... [more]
PSAF_FLATR1.595e-6283.33Photosystem I reaction center subunit III, chlorop... [more]
PSAF_HORVU1.264e-5978.26Photosystem I reaction center subunit III, chlorop... [more]
PSAF_CHLRE1.360e-3755.94Photosystem I reaction center subunit III, chlorop... [more]
PSAF_PORYE3.956e-3752.17Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_GUITH8.812e-3752.17Photosystem I reaction center subunit III OS=Guill... [more]
PSAF_PORPU1.963e-3651.45Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_CYAPA8.248e-3551.45Photosystem I reaction center subunit III OS=Cyano... [more]
PSAF_GRATL1.837e-3451.09Photosystem I reaction center subunit III OS=Graci... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-627 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417697 ID=CF417697; Name=CF417697; organism=Citrus sinensis; type=EST; length=696bp
ACACACACACACACACACACTCACCCTGAAAGAAAAGAAGAAAAGGAAAA
AGAAGATGTCTCTGACAATTCCAACAAATCTTTCAAAACCCCTATTGAAG
CCAAGATCAAACTCTCAGTTGAGCCATGCAAAATTATCGAAACAAATGAT
CACGTGCTCTTCTTCCGCTGGTTCTGAAGAGACTTCCTCTTCTTCTGGCA
AGGCCGCCAAGCCGCTCCAGGCTTTCTCAGCAGCCCTTGCACTTTCCTCA
ATTCTGCTATCAGCCCCACAGCTCGCAGTTGCCGACATCAGCGGCCTCAC
CCCATGCAAAGAGTCCAAACAATTCGCCAAGCGCGAGAAGCAGCAGCTCA
AGAAGCTCGAGTCTTCACTAAAACTGTACGCTCCCGACAGCGCCCCGGCT
CTCGCAATCAAAGCCACCATGGAGAAGACGAAACGGCGGTTTGACAACTA
CGGGAAGTACGGGTTGCTGTGCGGGTCAGATGGGTTGCCGCATCTGATTG
TGAGCGGTGACCAGAGGCACTGGGGTGAGTTTATCACTCCGGGGTTGTTG
TTTTTGTACATAGCTGGATGGATCGGGTGGGTTGGCAGGAGCTACTTGAT
CGCCATTAGCGGTGAAAAGAAGCCGGCCATGAAGGAGATCATCATTGATG
TTCCTTTGGCTTCCAGGTTGGTCTTCAGAGGTTTTAGCTGGCCTGT
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