CF417698

Overview
NameCF417698
Unique NameCF417698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417698_ssr396 microsatellite CF417698_ssr396:396..410. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig479 contig Csv1_Contig479:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417698 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.429e-21
Identity = 49/77 (63.64%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 APSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL 231
            AP+    +  G   S +IR+RGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS             +LRGPKAKTNFPL
Sbjct:    9 APAPVTGEPNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPL 85          
BLAST of CF417698 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   49 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNIS 240
            +IR+RGVRKRPWGRFAAEIRDPWKK RVWLGTFDS             +LRGPKAKTNFP++ S
Sbjct:   25 EIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPIDSS 88          
BLAST of CF417698 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   55 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDS 246
            RYRGVRKRPWGRFAAEIRDP KK+RVWLGTFDS             +LRGPKAKTNFP++ S S
Sbjct:   26 RYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPIDCSPS 89          
BLAST of CF417698 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 42/68 (61.76%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   49 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFN 252
            ++ YRGVRKRPWGR+AAEIRDPWKKTRVWLGTFD+              LRG KAKTNFP  +S   N
Sbjct:    9 EVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSPLSLDLN 76          
BLAST of CF417698 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   49 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL---NISDSFNAPIREENG 276
            ++ YRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+               RGPKAKTNFPL   N S S ++ +   +G
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLPSENQSTSHSSTMESSSG 102          
BLAST of CF417698 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    1 APSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDS 246
            AP+ P    +   A+ +IRYRGVRKRPWGR+AAEIRDP KKTRVWLGTFD+               RG KAKTNF + +  S
Sbjct:   14 APTNPTHHESN--AAKEIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSS 93          
BLAST of CF417698 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   49 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP--LNISD 243
            +IRYRGVRKRPWGR+AAEIRDP KKTRVWLGTFD+               RG KAKTNFP  L +SD
Sbjct:   22 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFLELSD 88          
BLAST of CF417698 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.379e-16
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   49 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL---NISDSFNAPIREENG 276
            ++ YRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+               RGPKAKTNFP    N S S ++ +   +G
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSPTENQSPSHSSTVESSSG 102          
BLAST of CF417698 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   52 IRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP 228
            +RYRGVRKRPWGR+AAEIRDP+KK+RVWLGTFD+               RG KAKTNFP
Sbjct:   18 VRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CF417698 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   49 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL 231
            ++ +RGVRKRPWGR+AAEIRDP KKTRVWLGTFD+               RG KAKTNFPL
Sbjct:   30 EVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPL 90          
The following BLAST results are available for this feature:
BLAST of CF417698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ERF3_TOBAC2.429e-2163.64Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF82_ARATH1.333e-1968.75Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF83_ARATH1.924e-1868.75Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF81_ARATH1.247e-1761.76Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF4_NICSY4.740e-1754.43Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF79_ARATH1.056e-1653.66Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF78_ARATH1.056e-1664.18Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF4_TOBAC1.379e-1653.16Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF76_ARATH6.844e-1664.41Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF80_ARATH1.167e-1562.30Ethylene-responsive transcription factor 9 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-628 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417698 ID=CF417698; Name=CF417698; organism=Citrus sinensis; type=EST; length=709bp
GCGCCCAGTAAGCCGATAGAGAAACGCACCGGACCCGAAGCATCGCCCGA
CATCCGATACAGAGGCGTGAGGAAGCGTCCATGGGGCAGATTCGCCGCCG
AGATCCGAGATCCCTGGAAGAAGACGCGTGTCTGGCTCGGCACCTTCGAC
TCAGCCGAAGACGCCGCGCGTGCGTACGACGCCGCCGCGCGTTCCCTCCG
TGGCCCCAAGGCCAAGACCAATTTTCCCCTCAATATTTCGGACTCTTTTA
ACGCTCCGATACGGGAGGAAAATGGAGGGTTTTGTAAGTTTGACTCGGTT
GTTCAGGTCAACCGGCCCACGACGAGCAGCATGAGCAGCACCGTCGAGTC
CTTCAGTGGGCCCCGGCCGGCCAATCAGTTGGCGCCACCACGTCTGCAGC
AGCAGCAGCAGAAGAAGATCGTCGTGCAACCGGCGGCAGGGGATGACTGT
CGGAGCGATTGCGATTCTTCATCGTCGGTTATTGATGATGGTGACGATTG
CGTTTTCTCTTCGTCGTTGTTCAGGAAAGTCCTGCCATTTGATCTGAATC
TACCGCCACCCCCCCCTCCGCCGATGATGACGCTGATGGACGGCGGTGAT
GATCTTCGATTGTGCCTCTGAATATAAACGACTTAGAATCGTTTGATTGT
ATGTTTCTCAATGGTTATTTTTCTTTTTCTTTCTTTTAAAGTCGATTACT
TTTTATCGG
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