CF417699

Overview
NameCF417699
Unique NameCF417699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9675 contig Csv1_Contig9675:297..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417699 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.065e-46
Identity = 94/124 (75.81%), Postives = 107/124 (86.29%), Query Frame = 2
Query:   11 PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 376
            PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:   73 PQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CF417699 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.904e-37
Identity = 70/108 (64.81%), Postives = 95/108 (87.96%), Query Frame = 2
Query:   53 EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 376
            ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:   90 DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CF417699 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.698e-32
Identity = 69/121 (57.02%), Postives = 85/121 (70.25%), Query Frame = 2
Query:   17 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 376
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:   50 PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CF417699 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.217e-32
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 2
Query:   17 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 364
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of CF417699 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.217e-32
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 2
Query:    5 AEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 376
            A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  105 AAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CF417699 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-18
Identity = 60/120 (50.00%), Postives = 71/120 (59.17%), Query Frame = 2
Query:   11 PQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 364
            P PP  P   T  +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   56 PPPPPTPAAPT-VTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CF417699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA2.065e-4675.81Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL3.904e-3764.81Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU1.698e-3257.02Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU2.217e-3258.12Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU2.217e-3257.94High molecular mass early light-inducible protein ... [more]
CBR_DUNBA1.822e-1850.00Carotene biosynthesis-related protein CBR, chlorop... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-629 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417699 ID=CF417699; Name=CF417699; organism=Citrus sinensis; type=EST; length=475bp
GAAAGCTGAGCCTCAGCCACCAAAGAAGCCGCGGATGAGCACGGGGTTCT
CTGAGGTGTTTGCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGGAGG
CTTGCGATGATTGGGTTCGTGGCTGCATTGGGGGTGGAGATATCCAAGGG
TCAGGATGTGTTTGCCCAGTTATCAGACGGTGGGGTTGCCTGGTTCTTGG
GGACCAGTGTTTTGCTCACGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGT
GTCAGCGTGGAGTCTAAATCGGATGGGTTCATGACTTCGGATGCTGAGTT
GTGGAATGGGAGGTTTGCTATGCTGGGCCTTGTTGCTTTGGCTTTCACCG
AGTTTGTTAAGGGTGGCACCCTTGTTTAAGCTTAATTTTGTTTAGATCTG
TAGATCTGTATTTTTTTTAACTAATTAATGTATGAGATCCTACTGTAATT
AAATCTCTATTTCTCATGCCAAAAA
back to top