CF417701 | Citrus Genome Database

Overview


Name	CF417701
Unique Name	CF417701
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	687

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig480	contig	Csv1_Contig480:1..688.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417701 vs. ExPASy Swiss-Prot
Match: PT3K1_SOLTU (Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.041e-38
Identity = 85/199 (42.71%), Postives = 131/199 (65.83%), Query Frame = 3

Query:   36 LLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVAANNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKKELK-YNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGS 629
            L+ PKYDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  +    +A++ DIC ST+AAPTYFPPHY  T  S +G    F+LVDG VAA +P+LL+IS ++  + +++P F     ++ + ML+LSLGTGT  +  K Y A +A+KWGI +W+     +P+ ++ S  SS + D+++S +FQ+  S
Sbjct:  109 LVEPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKTPELDAKMYDICYSTAAAPTYFPPHYFATNTS-NGDQYDFNLVDGDVAAVDPSLLSIS-VATRLAQEDPAFASIKSLNYKQMLLLSLGTGTNSEFAKNYTAEEAAKWGILQWM-----SPLWEMRSAASSYMNDYYLSTVFQALDS 300

HSP 2 Score: 25.0238 bits (53), Expect = 1.041e-38
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 2

Query:  620 LRKQDXYLRIQDDTLTGDAAS 682
            L  Q+ YLR+Q++ LTG A +
Sbjct:  298 LDSQNNYLRVQENALTGTATT 318

[Close]

BLAST of CF417701 vs. ExPASy Swiss-Prot
Match: PATJ1_SOLTU (Patatin group J-1 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.413e-35
Identity = 80/195 (41.03%), Postives = 125/195 (64.10%), Query Frame = 3

Query:   42 GPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGT-AKKELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQS 620
            GPKYDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPH+  T  S +G T  F+LVDGGVA   +P LL++S ++  + +++P F     +D + ML+LSLGTGT ++ +  Y A +A+KWG   W+       I  + +  SS + D+++S +FQ+
Sbjct:  123 GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGGVATVGDPALLSLS-VATRLAQEDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAEEAAKWGPLRWM-----LAIQQMTNAASSYMTDYYISTVFQA 310

HSP 2 Score: 22.7126 bits (47), Expect = 6.413e-35
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 2

Query:  629 QDXYLRIQDDTLTG 670
            Q+ YLR+Q++ LTG
Sbjct:  314 QNNYLRVQENALTG 327

[Close]

BLAST of CF417701 vs. ExPASy Swiss-Prot
Match: PAT15_SOLTU (Patatin-15 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.088e-34
Identity = 79/197 (40.10%), Postives = 126/197 (63.96%), Query Frame = 3

Query:   36 LLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGT-AKKELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQS 620
            + GP+YDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPH+  T  S +G T  F+LVDGGVA   +P LL++S ++  + +++P F     +D + ML+LSLGTGT ++ +  Y A +A+KWG   W+       I  + +  SS + D+++S +FQ+
Sbjct:  120 IFGPRYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGGVATVGDPALLSLS-VATRLAQEDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAEEAAKWGPLRWM-----LAIQQMTNAASSYMTDYYISTVFQA 309

HSP 2 Score: 22.7126 bits (47), Expect = 1.088e-34
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 2

Query:  629 QDXYLRIQDDTLTG 670
            Q+ YLR+Q++ LTG
Sbjct:  313 QNNYLRVQENALTG 326

[Close]

BLAST of CF417701 vs. ExPASy Swiss-Prot
Match: PAT06_SOLTU (Patatin-06 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.088e-34
Identity = 79/197 (40.10%), Postives = 126/197 (63.96%), Query Frame = 3

Query:   36 LLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGT-AKKELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQS 620
            + GP+YDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPH+  T  S +G T  F+LVDGGVA   +P LL++S ++  + +++P F     +D + ML+LSLGTGT ++ +  Y A +A+KWG   W+       I  + +  SS + D+++S +FQ+
Sbjct:  120 IFGPRYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGGVATVGDPALLSLS-VATRLAQEDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAEEAAKWGPLRWM-----LAIQQMTNAASSYMTDYYISTVFQA 309

HSP 2 Score: 22.7126 bits (47), Expect = 1.088e-34
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 2

Query:  629 QDXYLRIQDDTLTG 670
            Q+ YLR+Q++ LTG
Sbjct:  313 QNNYLRVQENALTG 326

[Close]

BLAST of CF417701 vs. ExPASy Swiss-Prot
Match: PAT12_SOLTU (Patatin-12 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.417e-34
Identity = 80/195 (41.03%), Postives = 124/195 (63.59%), Query Frame = 3

Query:   42 GPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGT-AKKELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQS 620
            GPKYDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPHY  T  S +G    F+LVDGGVA   +P LL++S ++  + +++P F     +D + ML+LSLGTGT ++ +  Y A +A+KWG   W+       I  + +  SS + D+++S +FQ+
Sbjct:  123 GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHYFITHTS-NGDIYEFNLVDGGVATVGDPALLSLS-VATRLAQEDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAQEAAKWGPLRWM-----LAIRQMTNAASSYMADYYISTVFQA 310

HSP 2 Score: 22.7126 bits (47), Expect = 1.417e-34
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 2

Query:  629 QDXYLRIQDDTLTG 670
            Q+ YLR+Q++ LTG
Sbjct:  314 QNNYLRVQENALTG 327

[Close]

BLAST of CF417701 vs. ExPASy Swiss-Prot
Match: PT2K4_SOLTU (Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.418e-34
Identity = 80/197 (40.61%), Postives = 125/197 (63.45%), Query Frame = 3

Query:   36 LLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGT-AKKELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQS 620
            +LGP YDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  E+   +A++ DIC ST+AAP YFPPHY  T  S +G    F+LVDGGVA   +P LL++S ++ ++ + +P+F     +D + ML+LSLGTGT ++ +  Y A + +KWG   W+       I  + +  SS + D+++S +FQ+
Sbjct:  108 ILGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAESPQLDAKMYDICYSTAAAPIYFPPHYFVTHTS-NGDRYEFNLVDGGVATVGDPALLSLS-VATKLAQVDPKFASIKSLDYKQMLLLSLGTGTNSEFDKTYTAQETAKWGPLRWM-----LAIQQMTNAASSYMTDYYISTVFQA 297

HSP 2 Score: 22.7126 bits (47), Expect = 1.418e-34
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 2

Query:  629 QDXYLRIQDDTLTG 670
            Q+ YLR+Q++ LTG
Sbjct:  301 QNNYLRVQENALTG 314

[Close]

BLAST of CF417701 vs. ExPASy Swiss-Prot
Match: PAT0_SOLTU (Patatin OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.404e-34
Identity = 79/197 (40.10%), Postives = 124/197 (62.94%), Query Frame = 3

Query:   36 LLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGT-AKKELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQS 620
            + GP+YDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  E+   +A++ DIC ST+AAP YFPPH+  T  S +G T  F+LVDG VA   +P LL++S ++  + + +P F     +D + ML+LSLGTGT ++ +  Y A +A+KWG   W+       I  + +  SS + D+++S +FQ+
Sbjct:  120 IFGPRYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAESPQLDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGAVATVGDPALLSLS-VATRLAQDDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAEEAAKWGPLRWM-----LAIQQMTNAASSYMTDYYISTVFQA 309

HSP 2 Score: 22.7126 bits (47), Expect = 2.404e-34
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 2

Query:  629 QDXYLRIQDDTLTG 670
            Q+ YLR+Q++ LTG
Sbjct:  313 QNNYLRVQENALTG 326

[Close]

BLAST of CF417701 vs. ExPASy Swiss-Prot
Match: PATM3_SOLTU (Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.131e-34
Identity = 79/197 (40.10%), Postives = 125/197 (63.45%), Query Frame = 3

Query:   36 LLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGT-AKKELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQS 620
            ++GP YDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPHY  T  S +G    F+LVDGGVA   +P LL++S ++  + +++P F     +D + ML+LSLGTGT ++ +  Y A +A+KWG   W+       I  + +  SS + D+++S +FQ+
Sbjct:  120 IIGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHYFITHTS-NGDIYEFNLVDGGVATVGDPALLSLS-VATRLAQEDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAQEAAKWGPLRWM-----LAIQQMTNAASSYMTDYYISTVFQA 309

HSP 2 Score: 22.7126 bits (47), Expect = 3.131e-34
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 2

Query:  629 QDXYLRIQDDTLTG 670
            Q+ YLR+Q++ LTG
Sbjct:  313 QNNYLRVQENALTG 326

[Close]

BLAST of CF417701 vs. ExPASy Swiss-Prot
Match: PATM2_SOLTU (Patatin group M-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.131e-34
Identity = 79/197 (40.10%), Postives = 125/197 (63.45%), Query Frame = 3

Query:   36 LLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGT-AKKELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQS 620
            ++GP YDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPHY  T  S +G    F+LVDGGVA   +P LL++S ++  + +++P F     +D + ML+LSLGTGT ++ +  Y A +A+KWG   W+       I  + +  SS + D+++S +FQ+
Sbjct:  120 IIGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHYFITHTS-NGDIYEFNLVDGGVATVGDPALLSLS-VATRLAQEDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAQEAAKWGPLRWM-----LAIQQMTNAASSYMTDYYISTVFQA 309

HSP 2 Score: 22.7126 bits (47), Expect = 3.131e-34
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 2

Query:  629 QDXYLRIQDDTLTG 670
            Q+ YLR+Q++ LTG
Sbjct:  313 QNNYLRVQENALTG 326

[Close]

BLAST of CF417701 vs. ExPASy Swiss-Prot
Match: PATM1_SOLTU (Patatin group M-1 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.131e-34
Identity = 79/197 (40.10%), Postives = 125/197 (63.45%), Query Frame = 3

Query:   36 LLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGT-AKKELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQS 620
            ++GP YDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPHY  T  S +G    F+LVDGGVA   +P LL++S ++  + +++P F     +D + ML+LSLGTGT ++ +  Y A +A+KWG   W+       I  + +  SS + D+++S +FQ+
Sbjct:  120 IIGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHYFITHTS-NGDIYEFNLVDGGVATVGDPALLSLS-VATRLAQEDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAQEAAKWGPLRWM-----LAIQQMTNAASSYMTDYYISTVFQA 309

HSP 2 Score: 22.7126 bits (47), Expect = 3.131e-34
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 2

Query:  629 QDXYLRIQDDTLTG 670
            Q+ YLR+Q++ LTG
Sbjct:  313 QNNYLRVQENALTG 326

The following BLAST results are available for this feature:

BLAST of CF417701 vs. ExPASy Swiss-Prot

BLAST of CF417701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34


Match Name	E-value	Identity	Description
PT3K1_SOLTU	1.041e-38	42.71	Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 ...	[more]
PATJ1_SOLTU	6.413e-35	41.03	Patatin group J-1 OS=Solanum tuberosum PE=2 SV=1	[more]
PAT15_SOLTU	1.088e-34	40.10	Patatin-15 OS=Solanum tuberosum PE=2 SV=1	[more]
PAT06_SOLTU	1.088e-34	40.10	Patatin-06 OS=Solanum tuberosum PE=2 SV=1	[more]
PAT12_SOLTU	1.417e-34	41.03	Patatin-12 OS=Solanum tuberosum PE=2 SV=1	[more]
PT2K4_SOLTU	1.418e-34	40.61	Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 ...	[more]
PAT0_SOLTU	2.404e-34	40.10	Patatin OS=Solanum tuberosum PE=3 SV=1	[more]
PATM3_SOLTU	3.131e-34	40.10	Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1	[more]
PATM2_SOLTU	3.131e-34	40.10	Patatin group M-2 OS=Solanum tuberosum PE=2 SV=1	[more]
PATM1_SOLTU	3.131e-34	40.10	Patatin group M-1 OS=Solanum tuberosum PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-631 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_C03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417701 ID=CF417701; Name=CF417701; organism=Citrus sinensis; type=EST; length=687bp
TCTTGGAATCGATTGCAAGCTCTATCGATAAACTGCTGCTTGGACCAAAG
TATGATGGGAAGTACCTGCGGACACTAGTGAACGATTTACTAGGAGACGT
TACTGTGAAAGAGACTCTTACCAACGTGGTTATACCAACTTTTGACATCA
AGCTTCTTCAACCAGTCATCTTCTCAACCACCGATGGAAAAGAGAACGTT
TTGAAGAATGCTCGGCTGGCTGATATATGCATCAGCACTTCTGCAGCGCC
CACTTACTTCCCACCTCACTACTTGGAGACTAAGGACAGTGACAGTGGCG
GAACCCGCACTTTTGATCTTGTTGACGGTGGAGTTGCTGCTAATAATCCT
ACCCTATTGGCAATAAGCCACATATCGAAGGAAATGGTGAAGCAGAACCC
CCAGTTCAGGGACAAAAACCCAATGGACGGTAGAGATATGCTGGTACTAT
CACTAGGCACAGGTACAGCCAAGAAAGAATTGAAGTACAATGCAGCCAAA
GCCTCCAAGTGGGGCATTTTCGAATGGATCTATGAAGATAGCAATACCCC
AATACTCGACATCTACTCTGATGGAAGCTCCGATATTGTTGATTTCCATG
TGTCTGCTCTCTTTCAATCCTGCGGAAGCAGGACNACTACCTTCGAATTC
AGGACGACACGTTGACTGGTGATGCAGCATCTGTTGA