CF417702

Overview
NameCF417702
Unique NameCF417702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417702 vs. ExPASy Swiss-Prot
Match: COG4_ARATH (Conserved oligomeric Golgi complex subunit 4 OS=Arabidopsis thaliana GN=COG4 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.796e-50
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 1
Query:    1 DIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEIN-AQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATKAFREWKFQQGCSG--NYWVLCD 417
            DIV+AIEENDEILRGLCGEDG+ YAICELQEECD RG LILKKYM++RKL  L+++IN + N N+L  G SEGPDPREVELY+EEILSLMQLGEDYTEFMVSKIKSL+SVDP L+P ATKAFR   F +       Y+V+ +
Sbjct:  265 DIVMAIEENDEILRGLCGEDGVAYAICELQEECDLRGSLILKKYMDFRKLAILASDINNSPNLNILPGGASEGPDPREVELYVEEILSLMQLGEDYTEFMVSKIKSLTSVDPELLPTATKAFRNKSFSKAIQDVTRYYVILE 406          

HSP 2 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 58/86 (67.44%), Postives = 64/86 (74.42%), Query Frame = 2
Query:  374 SFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAISTXXXXXXXXXXXXXXXXXXXEYQEAL 631
            SFSK +Q++T +YVILEGFFMVENVRKAIRIDE+VPDSLTTSMVDDVFYVLQSCLRRAIST                   +Y EAL
Sbjct:  390 SFSKAIQDVTRYYVILEGFFMVENVRKAIRIDEHVPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSYAGSLLGNDYHEAL 475          
BLAST of CF417702 vs. ExPASy Swiss-Prot
Match: COG4_MOUSE (Conserved oligomeric Golgi complex subunit 4 OS=Mus musculus GN=Cog4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.211e-16
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  356 RLLGSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAIST 556
            +LL +   S  +QE+ GFY+ +E +FM E V KA+ +D Y    LT+SMVDDVFY+++ C+ RA+S+
Sbjct:  402 KLLNNCLLSCTMQELIGFYITMEEYFMRETVNKAVALDTYEKGQLTSSMVDDVFYIVKKCIGRALSS 468          

HSP 2 Score: 35.8094 bits (81), Expect = 2.211e-16
Identity = 26/118 (22.03%), Postives = 51/118 (43.22%), Query Frame = 1
Query:    4 IVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINAQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATK 357
            I   +E +  I+    G   +   I  LQ ECD++   ++ K+++ R   +   +      NL+    +E  +PRE++  L E+  +    E Y  F+  +I +   V  ++     K
Sbjct:  279 IARIVETHQPIVETYYGPGRLFTLIKYLQVECDTQVEKVVNKFIKQRDYHQ---QFRLVQSNLMRNSATEKIEPRELDPVLTEVTLMNARSELYLRFLRKRISADFEVGDSMASEEVK 393          
BLAST of CF417702 vs. ExPASy Swiss-Prot
Match: COG4_BOVIN (Conserved oligomeric Golgi complex subunit 4 OS=Bos taurus GN=COG4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.855e-16
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  356 RLLGSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAIST 556
            +LL +   S  +QE+ G Y+ +E +FM E V KA+ +D Y    LT+SMVDDVFY+++ C+ RA+S+
Sbjct:  402 KLLNNCLLSCTMQELIGLYITMEEYFMRETVNKAVALDTYEKGQLTSSMVDDVFYIVKKCIGRALSS 468          

HSP 2 Score: 36.965 bits (84), Expect = 4.855e-16
Identity = 28/118 (23.73%), Postives = 51/118 (43.22%), Query Frame = 1
Query:    4 IVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINAQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATK 357
            I   +E +  I+    G   +   I  LQ ECD +   ++ K+++ R   +    + +   NL+    SE  +PRE++  L E+  +    E Y  F+  +I S   V  ++     K
Sbjct:  279 IARIVETHQPIVETYYGPGRLYTLIKYLQVECDRQVEKVVDKFIKQRDYRQQFRHVQS---NLMRNSTSEKIEPRELDPILTEVTLMNARSELYLRFLRKRISSDFEVGDSMASEEVK 393          
BLAST of CF417702 vs. ExPASy Swiss-Prot
Match: COG4_PONAB (Conserved oligomeric Golgi complex subunit 4 OS=Pongo abelii GN=COG4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.199e-16
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  356 RLLGSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAIST 556
            +LL +   S  +QE+ G YV +E +FM E V KA+ +D Y    LT+SMVDDVFY+++ C+ RA+S+
Sbjct:  402 KLLNNCLLSCTMQELIGLYVTMEEYFMRETVNKAVALDTYEKGQLTSSMVDDVFYIVKKCIGRALSS 468          

HSP 2 Score: 35.8094 bits (81), Expect = 8.199e-16
Identity = 27/118 (22.88%), Postives = 50/118 (42.37%), Query Frame = 1
Query:    4 IVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINAQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATK 357
            I   +E +  I+    G   +   I  LQ ECD +   ++ K+++ R   +    +     NL+    +E  +PRE++  L E+  +    E Y  F+  +I S   V  ++     K
Sbjct:  279 IARIVETHQPIVETYYGPGRLYTLIKYLQVECDRQVEKVVDKFIKQRDYHQQFRHVQ---NNLMRNSTTEKIEPRELDPILTEVTLMNARSELYLRFLKKRISSDFEVGDSMASEEVK 393          
BLAST of CF417702 vs. ExPASy Swiss-Prot
Match: COG4_HUMAN (Conserved oligomeric Golgi complex subunit 4 OS=Homo sapiens GN=COG4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.199e-16
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  356 RLLGSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAIST 556
            +LL +   S  +QE+ G YV +E +FM E V KA+ +D Y    LT+SMVDDVFY+++ C+ RA+S+
Sbjct:  402 KLLNNCLLSCTMQELIGLYVTMEEYFMRETVNKAVALDTYEKGQLTSSMVDDVFYIVKKCIGRALSS 468          

HSP 2 Score: 35.8094 bits (81), Expect = 8.199e-16
Identity = 27/118 (22.88%), Postives = 50/118 (42.37%), Query Frame = 1
Query:    4 IVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINAQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATK 357
            I   +E +  I+    G   +   I  LQ ECD +   ++ K+++ R   +    +     NL+    +E  +PRE++  L E+  +    E Y  F+  +I S   V  ++     K
Sbjct:  279 IARIVETHQPIVETYYGPGRLYTLIKYLQVECDRQVEKVVDKFIKQRDYHQQFRHVQ---NNLMRNSTTEKIEPRELDPILTEVTLMNARSELYLRFLKKRISSDFEVGDSMASEEVK 393          
The following BLAST results are available for this feature:
BLAST of CF417702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
COG4_ARATH5.796e-5071.13Conserved oligomeric Golgi complex subunit 4 OS=Ar... [more]
COG4_MOUSE2.211e-1646.27Conserved oligomeric Golgi complex subunit 4 OS=Mu... [more]
COG4_BOVIN4.855e-1644.78Conserved oligomeric Golgi complex subunit 4 OS=Bo... [more]
COG4_PONAB8.199e-1646.27Conserved oligomeric Golgi complex subunit 4 OS=Po... [more]
COG4_HUMAN8.199e-1646.27Conserved oligomeric Golgi complex subunit 4 OS=Ho... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-632 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417702 ID=CF417702; Name=CF417702; organism=Citrus sinensis; type=EST; length=631bp
GATATTGTGTTAGCTATTGAGGAAAATGATGAAATTTTGAGGGGTTTATG
TGGTGAGGATGGGATTGTTTATGCCATATGCGAGTTACAAGAGGAGTGTG
ATTCCAGGGGGTGCTTGATTTTGAAGAAATATATGGAGTATAGAAAGTTG
GGTAAGTTATCGGCTGAGATTAACGCTCAAAATAAGAATTTGCTTAATGT
GGGTGTGAGTGAGGGGCCCGATCCAAGAGAGGTTGAATTATATTTGGAAG
AAATTTTGTCATTGATGCAATTGGGTGAGGATTATACTGAATTTATGGTG
TCTAAAATTAAGAGTTTGAGTTCTGTAGATCCAGCGTTGGTGCCACGAGC
TACTAAGGCTTTTAGGGAGTGGAAGTTTCAGCAAGGTTGTTCAGGAAATT
ACTGGGTTTTATGTGATTTTAGAGGGTTTCTTTATGGTGGAGAATGTTAG
AAAGGCTATTAGGATAGATGAGTATGTACCTGATAGCCTTACCACGTCTA
TGGTGGACGATGTCTTTTATGTTTTGCAGAGTTGTCTGCGGAGGGCTATA
TCTACTTCAAATATCAGCTCTGTGATTGCTGTCTTGAGCAGTGCATCTAG
TTTGTTGAGCAATGAATACCAGGAGGCTTTG
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