CF417702
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417702 vs. ExPASy Swiss-Prot
Match: COG4_ARATH (Conserved oligomeric Golgi complex subunit 4 OS=Arabidopsis thaliana GN=COG4 PE=2 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 5.796e-50 Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 1 Query: 1 DIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEIN-AQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATKAFREWKFQQGCSG--NYWVLCD 417 DIV+AIEENDEILRGLCGEDG+ YAICELQEECD RG LILKKYM++RKL L+++IN + N N+L G SEGPDPREVELY+EEILSLMQLGEDYTEFMVSKIKSL+SVDP L+P ATKAFR F + Y+V+ + Sbjct: 265 DIVMAIEENDEILRGLCGEDGVAYAICELQEECDLRGSLILKKYMDFRKLAILASDINNSPNLNILPGGASEGPDPREVELYVEEILSLMQLGEDYTEFMVSKIKSLTSVDPELLPTATKAFRNKSFSKAIQDVTRYYVILE 406 HSP 2 Score: 112.849 bits (281), Expect = 1.438e-24 Identity = 58/86 (67.44%), Postives = 64/86 (74.42%), Query Frame = 2 Query: 374 SFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAISTXXXXXXXXXXXXXXXXXXXEYQEAL 631 SFSK +Q++T +YVILEGFFMVENVRKAIRIDE+VPDSLTTSMVDDVFYVLQSCLRRAIST +Y EAL Sbjct: 390 SFSKAIQDVTRYYVILEGFFMVENVRKAIRIDEHVPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSYAGSLLGNDYHEAL 475
BLAST of CF417702 vs. ExPASy Swiss-Prot
Match: COG4_MOUSE (Conserved oligomeric Golgi complex subunit 4 OS=Mus musculus GN=Cog4 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.211e-16 Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 356 RLLGSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAIST 556 +LL + S +QE+ GFY+ +E +FM E V KA+ +D Y LT+SMVDDVFY+++ C+ RA+S+ Sbjct: 402 KLLNNCLLSCTMQELIGFYITMEEYFMRETVNKAVALDTYEKGQLTSSMVDDVFYIVKKCIGRALSS 468 HSP 2 Score: 35.8094 bits (81), Expect = 2.211e-16 Identity = 26/118 (22.03%), Postives = 51/118 (43.22%), Query Frame = 1 Query: 4 IVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINAQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATK 357 I +E + I+ G + I LQ ECD++ ++ K+++ R + + NL+ +E +PRE++ L E+ + E Y F+ +I + V ++ K Sbjct: 279 IARIVETHQPIVETYYGPGRLFTLIKYLQVECDTQVEKVVNKFIKQRDYHQ---QFRLVQSNLMRNSATEKIEPRELDPVLTEVTLMNARSELYLRFLRKRISADFEVGDSMASEEVK 393
BLAST of CF417702 vs. ExPASy Swiss-Prot
Match: COG4_BOVIN (Conserved oligomeric Golgi complex subunit 4 OS=Bos taurus GN=COG4 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.855e-16 Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 2 Query: 356 RLLGSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAIST 556 +LL + S +QE+ G Y+ +E +FM E V KA+ +D Y LT+SMVDDVFY+++ C+ RA+S+ Sbjct: 402 KLLNNCLLSCTMQELIGLYITMEEYFMRETVNKAVALDTYEKGQLTSSMVDDVFYIVKKCIGRALSS 468 HSP 2 Score: 36.965 bits (84), Expect = 4.855e-16 Identity = 28/118 (23.73%), Postives = 51/118 (43.22%), Query Frame = 1 Query: 4 IVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINAQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATK 357 I +E + I+ G + I LQ ECD + ++ K+++ R + + + NL+ SE +PRE++ L E+ + E Y F+ +I S V ++ K Sbjct: 279 IARIVETHQPIVETYYGPGRLYTLIKYLQVECDRQVEKVVDKFIKQRDYRQQFRHVQS---NLMRNSTSEKIEPRELDPILTEVTLMNARSELYLRFLRKRISSDFEVGDSMASEEVK 393
BLAST of CF417702 vs. ExPASy Swiss-Prot
Match: COG4_PONAB (Conserved oligomeric Golgi complex subunit 4 OS=Pongo abelii GN=COG4 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.199e-16 Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 2 Query: 356 RLLGSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAIST 556 +LL + S +QE+ G YV +E +FM E V KA+ +D Y LT+SMVDDVFY+++ C+ RA+S+ Sbjct: 402 KLLNNCLLSCTMQELIGLYVTMEEYFMRETVNKAVALDTYEKGQLTSSMVDDVFYIVKKCIGRALSS 468 HSP 2 Score: 35.8094 bits (81), Expect = 8.199e-16 Identity = 27/118 (22.88%), Postives = 50/118 (42.37%), Query Frame = 1 Query: 4 IVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINAQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATK 357 I +E + I+ G + I LQ ECD + ++ K+++ R + + NL+ +E +PRE++ L E+ + E Y F+ +I S V ++ K Sbjct: 279 IARIVETHQPIVETYYGPGRLYTLIKYLQVECDRQVEKVVDKFIKQRDYHQQFRHVQ---NNLMRNSTTEKIEPRELDPILTEVTLMNARSELYLRFLKKRISSDFEVGDSMASEEVK 393
BLAST of CF417702 vs. ExPASy Swiss-Prot
Match: COG4_HUMAN (Conserved oligomeric Golgi complex subunit 4 OS=Homo sapiens GN=COG4 PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 8.199e-16 Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 2 Query: 356 RLLGSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAIST 556 +LL + S +QE+ G YV +E +FM E V KA+ +D Y LT+SMVDDVFY+++ C+ RA+S+ Sbjct: 402 KLLNNCLLSCTMQELIGLYVTMEEYFMRETVNKAVALDTYEKGQLTSSMVDDVFYIVKKCIGRALSS 468 HSP 2 Score: 35.8094 bits (81), Expect = 8.199e-16 Identity = 27/118 (22.88%), Postives = 50/118 (42.37%), Query Frame = 1 Query: 4 IVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINAQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATK 357 I +E + I+ G + I LQ ECD + ++ K+++ R + + NL+ +E +PRE++ L E+ + E Y F+ +I S V ++ K Sbjct: 279 IARIVETHQPIVETYYGPGRLYTLIKYLQVECDRQVEKVVDKFIKQRDYHQQFRHVQ---NNLMRNSTTEKIEPRELDPILTEVTLMNARSELYLRFLKKRISSDFEVGDSMASEEVK 393 The following BLAST results are available for this feature:
BLAST of CF417702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417702 ID=CF417702; Name=CF417702; organism=Citrus sinensis; type=EST; length=631bpback to top |