CF417703

Overview
NameCF417703
Unique NameCF417703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417703_ssr141 microsatellite CF417703_ssr141:141..152. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 1.756e-44
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 3
Query:  135 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 440
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 GDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147          
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 2.293e-44
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 3
Query:  165 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 440
            S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 2.995e-44
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 3
Query:  165 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 440
            S+ETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   47 SVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138          
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 3.912e-44
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 3
Query:  165 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 440
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   54 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.912e-44
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 3
Query:  135 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 440
            GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   36 GDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137          
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 3.912e-44
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 3
Query:  135 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 440
            GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   47 GDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 177.563 bits (449), Expect = 3.912e-44
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 3
Query:  135 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 440
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 6.673e-44
Identity = 91/102 (89.22%), Postives = 93/102 (91.18%), Query Frame = 3
Query:  135 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 440
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 6.673e-44
Identity = 91/102 (89.22%), Postives = 93/102 (91.18%), Query Frame = 3
Query:  135 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 440
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 1.942e-43
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 3
Query:  165 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 440
            S ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   41 STETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132          
The following BLAST results are available for this feature:
BLAST of CF417703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_GOSHI1.756e-4490.20Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B1_MEDTR2.293e-4498.91Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B3_MEDTR2.995e-4497.83Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B_CAPAN3.912e-4498.91Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B3_SOLLC3.912e-4489.22Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B1_ARATH3.912e-4489.22Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B11_ARATH3.912e-4489.22Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B7_ARATH6.673e-4489.22Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH6.673e-4489.22Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B9_ARATH1.942e-4397.83Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-633 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417703 ID=CF417703; Name=CF417703; organism=Citrus sinensis; type=EST; length=573bp
CGCAGTTTTTTCTGACGATGGCACCAAAGGCGGAGAAGAAGCCAGCGGAG
GAGAAGAAGACACCGGTGGCGGAGAAGGCGCCTGCCGAGAAGAAGCCGAA
GGCCGGGAAGAAGCTTCCGAAGGAAGCCGCAGCCGGTGACAAGAAGAAGA
AGCGCACGAAGAAGAGCATTGAGACGTACAAGATCTACATATTCAAAGTC
CTGAAGCAAGTCCATCCAGATATCGGAATCTCGAGCAAGGCTATGGGAAT
TATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCTCAGGAATCTT
CCAGGCTGGCAAGGTACAACAAGAAGCCGACGATAACTTCTCGTGAAATC
CAGACCGCTGTGAGACTTGTGCTTCCTGGTGAGCTGGCTAAGCATGCCGT
TTCTGAGGGTACCAAGGCGGTTACCAAGTTCACCTCGTCTTAAATTAGGG
TTAGGTTTGACTATGTGCGATGAAATTGGGGTTAGTGATGTTTACTGTGT
CCTTTCTTGGAGTAATAATGTAAGTAGTTAGTATTGGTGAAATGGCATGG
TGCTGATAGAAATGACTTATTTT
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