CF417707

Overview
NameCF417707
Unique NameCF417707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417707_ssr79 microsatellite CF417707_ssr79:79..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10229 contig Csv1_Contig10229:311..977. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417707 vs. ExPASy Swiss-Prot
Match: PSBP_CUCSA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.855e-82
Identity = 150/174 (86.21%), Postives = 159/174 (91.38%), Query Frame = 2
Query:    2 KTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 511
            K+NTD+LPY+GDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSN+SVII PTDKKSI D+GSPEEFLSKVDYLLGKQAY GKT+SEGGFDPDAVATANILEA+        YYF+SVLTRTADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKGARK+VE  ASSFSVA
Sbjct:   90 KSNTDYLPYSGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASEGGFDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEGAASSFSVA 263          
BLAST of CF417707 vs. ExPASy Swiss-Prot
Match: PSBP1_ARATH (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 2.955e-79
Identity = 141/174 (81.03%), Postives = 161/174 (92.53%), Query Frame = 2
Query:    2 KTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 511
            KTNTDFLPYNGDGFK+ +P+KWNPSKE E+PGQVLR+EDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE+S +     PYY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKGARK+VES A+SFSVA
Sbjct:   90 KTNTDFLPYNGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263          
BLAST of CF417707 vs. ExPASy Swiss-Prot
Match: PSBP_PEA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.267e-78
Identity = 143/174 (82.18%), Postives = 155/174 (89.08%), Query Frame = 2
Query:    2 KTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 511
            KTNTD+LPYNGDGFKL +P+KWNPSKEREFPGQVLRYEDNFD+ SNVSV++  TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SEGGFD +AVA ANILE+S        YY +SVLTRTADGDEGGKHQLITATVK GKLYICKAQAGDKRWFKGARK+VE TASSFSVA
Sbjct:   86 KTNTDYLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA 259          
BLAST of CF417707 vs. ExPASy Swiss-Prot
Match: PSBP_SOLTU (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 7.278e-78
Identity = 142/174 (81.61%), Postives = 153/174 (87.93%), Query Frame = 2
Query:    2 KTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 511
            K NTDFLPYNGDGFKL IP+KWNPSKE EFPGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGGF+  AVATAN+LEAS        YY+LSVLTRTADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKGA+K+VE+ A+SFS+A
Sbjct:   87 KENTDFLPYNGDGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 260          
BLAST of CF417707 vs. ExPASy Swiss-Prot
Match: PSBP_SOLLC (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.051e-76
Identity = 139/174 (79.89%), Postives = 152/174 (87.36%), Query Frame = 2
Query:    2 KTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 511
            K NTDFLPYNGDGFKL +P+KWNPSKE E+PGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGGF+  AVAT N+LEAS        YY+LSVLTRTADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKGA+K+VE+ A+SFS+A
Sbjct:   85 KENTDFLPYNGDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 258          
BLAST of CF417707 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 6.812e-76
Identity = 139/174 (79.89%), Postives = 151/174 (86.78%), Query Frame = 2
Query:    2 KTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 511
            KTNTDFLPY GDGF L IP+KWNPSKE EFPGQVLRYEDNFD  SNVSV +TPT KKSITDYG+PEEFLS VDYLLGKQAYSGKT+SEGGFDPD+VATANILE S        YY +SVLTRTADGDEGGKH +I+ATV  GKLYICKAQAGDKRWFKGA+K+VEST +SF+VA
Sbjct:   91 KTNTDFLPYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFLSTVDYLLGKQAYSGKTASEGGFDPDSVATANILEVSTPVVGGKQYYNISVLTRTADGDEGGKHHVISATVTDGKLYICKAQAGDKRWFKGAKKFVESTTTSFNVA 264          
BLAST of CF417707 vs. ExPASy Swiss-Prot
Match: PSBP1_TOBAC (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 1.982e-75
Identity = 138/174 (79.31%), Postives = 151/174 (86.78%), Query Frame = 2
Query:    2 KTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 511
            K NTDFL YNGDGFKL +P+KWNPSKE EFPGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFL++VD+LLGKQAY GKT SEGGF+  AVATAN+LE S        YY LSVLTRTADGDEGGKHQLI+ATV GGKLYICKAQAGDKRWFKGARK+VE+ A+SFSVA
Sbjct:   95 KENTDFLAYNGDGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFLTQVDFLLGKQAYFGKTDSEGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGDEGGKHQLISATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 268          
BLAST of CF417707 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.381e-75
Identity = 133/174 (76.44%), Postives = 156/174 (89.66%), Query Frame = 2
Query:    2 KTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 511
            K NTDF  Y+GDGF++ +P+KWNPS+E E+PGQVLRYEDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE +++     PYY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKGA K+VE  A+SFSVA
Sbjct:   87 KKNTDFTAYSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 260          
BLAST of CF417707 vs. ExPASy Swiss-Prot
Match: PSBP2_TOBAC (Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 4.415e-75
Identity = 136/174 (78.16%), Postives = 154/174 (88.51%), Query Frame = 2
Query:    2 KTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 511
            KT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S       PYY+LSVLTRTADG+EGGKHQLITATV  GKLYICKAQAGDKRWFKGA+K+VE+TA+SFS+A
Sbjct:   92 KTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265          
BLAST of CF417707 vs. ExPASy Swiss-Prot
Match: PSBP_SPIOL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.285e-74
Identity = 133/174 (76.44%), Postives = 152/174 (87.36%), Query Frame = 2
Query:    2 KTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 511
            K NT+F+PYNGDGFKL +PSKWNPSKE+EFPGQVLRYEDNFD+ SN+SV++ PTDKKSITD+GSPE+FLS+VDYLLGKQAY GKT SEGGFD   VA+AN+LE+S        YY ++VLTRTADGDEGGKHQ+I ATVK GKLYICKAQAGDKRWFKGA+K+VES  SSFSVA
Sbjct:   94 KKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA 267          
The following BLAST results are available for this feature:
BLAST of CF417707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP_CUCSA2.855e-8286.21Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP1_ARATH2.955e-7981.03Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_PEA3.267e-7882.18Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SOLTU7.278e-7881.61Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SOLLC1.051e-7679.89Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_FRIAG6.812e-7679.89Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP1_TOBAC1.982e-7579.31Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_SINAL3.381e-7576.44Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_TOBAC4.415e-7578.16Oxygen-evolving enhancer protein 2-2, chloroplasti... [more]
PSBP_SPIOL1.285e-7476.44Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-637 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417707 ID=CF417707; Name=CF417707; organism=Citrus sinensis; type=EST; length=667bp
AAAGACCAACACTGACTTCTTGCCATACAATGGAGATGGATTCAAGCTGT
CGATTCCCTCAAAATGGAACCCCAGCAAAGAGAGAGAGTTCCCGGGTCAG
GTTCTTAGATACGAAGACAACTTCGATTCCAACAGCAATGTCTCCGTCAT
AATCACCCCAACTGACAAGAAATCCATCACTGACTACGGTTCCCCCGAGG
AATTCCTCAGTAAGGTGGACTACTTGCTGGGAAAACAAGCCTATTCCGGC
AAAACTTCGTCTGAGGGTGGTTTCGACCCTGATGCTGTGGCAACAGCTAA
CATCTTGGAGGCTTCAGTCCGACCACCATACTACTTCTTGTCTGTATTAA
CAAGAACTGCTGATGGAGATGAAGGTGGCAAGCATCAACTAATTACAGCC
ACGGTTAAAGGTGGCAAGCTTTACATCTGCAAGGCACAAGCTGGAGACAA
GAGGTGGTTTAAGGGAGCAAGAAAGTATGTGGAAAGCACTGCCAGTTCTT
TCAGTGTTGCTTGAGACATTAATCAGAATTTTTATGTAAATCCAACTTAA
TGTATGCTGTTTGTTTTGAATTATCTACTCCCATCTTTCCCCAAAAGCTT
CTGAGTTTCTAATTGAAGGAGTTGGTTGGAAAAAGCTTGTGGATATTTGA
GTATTTAATGGCATATA
back to top